LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo09g0277	ATGGCAGTTACATTGTATGACCTTGGCTCTGCATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCACCCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACCTTACAGTGTATGCAGCTTTATCAAAAGTTCCATCTGCTGAATATGTGAATGTGTGCAGGTGGTACAAGCATATCGATGCATTGTTGAGAATCTCGGGTGTTTCTGGTGAGGGATCTGTTGTCACTGTGAAGTCTTCTCTCGTCGCTGAAGCTGTTGCCACTCCTCCACCAGCTGACTCTAAGGCTGCTGCGGCTGATGATGACGATGATGATGTGGATCTCTTTGGTGAAGAGACTGAGGAGGAGAAGAAGGCTGCCGAGGAACGTGCTGCTGCGCTAAAGGCATCTGGAAAGAAGAAAGAGTCTGGAAAATCATCTGTTTTGATGGATATCAAGCCATGGGATGATGAAACTGACATGAAAAAGCTTGAAGAAGCAGTGAGAGGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTTGTTCCTGTTGGGTATGGTATCAAGAAACTGCAAATCATGCTTACTATTGTGGATGATTTGGTCTCTGTCGATTCGCTCATCGAGGAGCAACTTACAGTCGAGCCGATCAACGAATATGTCCAGAGTTGTGACATTGTTGCTTTCAACAAAATATAA	690	0.4551	MAVTLYDLGSASGLKKLDEYLLTRSYITGYQASKDDLTVYAALSKVPSAEYVNVCRWYKHIDALLRISGVSGEGSVVTVKSSLVAEAVATPPPADSKAAAADDDDDDVDLFGEETEEEKKAAEERAAALKASGKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPINEYVQSCDIVAFNKI*	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo09g0277	229	CDD	EF1B	138	229	IPR014038	GO:0003746\|GO:0006414
	Amo09g0277	229	Gene3D	-	6	82	-	-
	Amo09g0277	229	SMART	EF1_GNE_2	140	229	IPR014038	GO:0003746\|GO:0006414
	Amo09g0277	229	Coils	Coil	112	132	-	-
	Amo09g0277	229	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	229	-	-
	Amo09g0277	229	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	104	112	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Amo09g0277	229	Pfam	EF-1 guanine nucleotide exchange domain	142	229	IPR014038	GO:0003746\|GO:0006414
	Amo09g0277	229	SUPERFAMILY	GST C-terminal domain-like	12	67	IPR036282	-
	Amo09g0277	229	PANTHER	ELONGATION FACTOR 1-DELTA 1-RELATED	1	229	-	-
	Amo09g0277	229	SUPERFAMILY	eEF-1beta-like	137	229	IPR036219	-
	Amo09g0277	229	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	218	229	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Amo09g0277	229	Gene3D	-	133	229	IPR014717	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo09g0277	Amo-Chr9	3215635	3218243	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo09g0277	7	229	Eukaryotic Initiation Factors Gene Family	AT2G18110	81.858	5.94e-114	323

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo09g0277	K03232		-	gmx:100777627	323.939