Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0239 ATGCTTGGTGAGACCAGTTGCCCAATGAAGGAGGATTTTATCATGGCTGATCCTCAGCATGCATGCAGTAATTGTAGTATTTCAATGGTGTCTGGCAACCGTTGGGTTTGCAACCAGTGCGAGAATTTTCAGATCTGTGATAGGTGCTATGAAGTGGAATTAAAACGTGAAGAGAGAGAAAGACATCCTATTGATCAAAGGCAGAGTCATACCCTTTATCCAATTGAAATCAATGATGTTCCAGTTGATACGAAGGACATAGATGATATTCTCGAGAGTGAATTCTTTAATACTAGAACATTTCATAATCCGACGGCTCCTGCATTTGTCACTACCTGTAATATATGCGATCTTGACATAGAAACTGGCCAAGGGTGGCGTTGTGAAGTTTGCCCCAAGTATGATGTATGTAAGTCTTGTTATCAAAAGGATGGAGGCATTGATCATCCCCATAAGTTGACAAATCATCCATCAATGGCAGATTGTGATGCTGAGAACAAAGAATCAAGGCAGCTTCGAGAATTGAAGCTACGGAAAATGCTTGATCTACTTGTGCATGTACCCCGATGTCGTTCTGCACATTGCCAGTATCCAGATTGCCGCAAAATAAAGGAGCTTTTCCGCCATGGGATGCAATGCAAAACACGTGCAGCTGGAGGTTGTGTTCGTTGTAGGAAAATGTGGTATTTGCTTCAACTCCATGCTCATGCTTGCAAGGAATCGAGGTGCCGTGTGCCACGTTGCAGGTTTGTGTGTTGGGCGTTGTCTCCCTCCTCTCAAATTTTTCATGCATTGACTTTTTTTCTTTTATGGGTTAAATCAGAGATTTGA 831 0.4248 MLGETSCPMKEDFIMADPQHACSNCSISMVSGNRWVCNQCENFQICDRCYEVELKREERERHPIDQRQSHTLYPIEINDVPVDTKDIDDILESEFFNTRTFHNPTAPAFVTTCNICDLDIETGQGWRCEVCPKYDVCKSCYQKDGGIDHPHKLTNHPSMADCDAENKESRQLRELKLRKMLDLLVHVPRCRSAHCQYPDCRKIKELFRHGMQCKTRAAGGCVRCRKMWYLLQLHAHACKESRCRVPRCRFVCWALSPSSQIFHALTFFLLWVKSEI* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0239 276 Gene3D - 106 161 IPR043145 -
Amo09g0239 276 PANTHER CBP/P300-RELATED 2 99 IPR013178 GO:0004402|GO:0006355|GO:0016573
Amo09g0239 276 ProSitePatterns Zinc finger ZZ-type signature. 22 49 IPR000433 GO:0008270
Amo09g0239 276 Pfam TAZ zinc finger 178 248 IPR000197 -
Amo09g0239 276 Gene3D - 15 73 IPR043145 -
Amo09g0239 276 SMART TAZ_2 171 249 IPR000197 -
Amo09g0239 276 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1 155 IPR031162 GO:0004402
Amo09g0239 276 Gene3D TAZ domain 165 259 IPR035898 -
Amo09g0239 276 PANTHER CBP/P300-RELATED 101 249 IPR013178 GO:0004402|GO:0006355|GO:0016573
Amo09g0239 276 SUPERFAMILY RING/U-box 3 75 - -
Amo09g0239 276 ProSiteProfiles Zinc finger TAZ-type profile. 170 251 IPR000197 -
Amo09g0239 276 ProSiteProfiles Zinc finger ZZ-type profile. 108 166 IPR000433 GO:0008270
Amo09g0239 276 SUPERFAMILY TAZ domain 170 249 IPR035898 -
Amo09g0239 276 PANTHER HISTONE ACETYLTRANSFERASE HAC12 101 249 - -
Amo09g0239 276 PANTHER HISTONE ACETYLTRANSFERASE HAC12 2 99 - -
Amo09g0239 276 Pfam Zinc finger, ZZ type 20 51 IPR000433 GO:0008270
Amo09g0239 276 Pfam Zinc finger, ZZ type 110 149 IPR000433 GO:0008270
Amo09g0239 276 SMART zz_5 16 60 IPR000433 GO:0008270
Amo09g0239 276 SMART zz_5 107 153 IPR000433 GO:0008270
Amo09g0239 276 ProSiteProfiles Zinc finger ZZ-type profile. 17 80 IPR000433 GO:0008270
Amo09g0239 276 SUPERFAMILY RING/U-box 96 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0239 Amo-Chr9 2721857 2725637 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Amo09g0239 zf-TAZ 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0239 K04498 - aip:107618596 523.472