Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0221 ATGGCTTACTATGGGAACACGATAGGTGATGATTTCACATCATGGAGTAGTTGTCTAAAGAACTTTGATTTCACTTCATTATGTACTCAAAGAAGCATAGTGGGAATCACAAATCTACTTTTTGTGTTTATGTTCTACACCGTTTTGCTTATTAGTTTCATCAAAAGAAGTTCTTCAAGAAATGGCAATACTAGCCACAGAAGAAAGAACAAGTTCTTCATATTTGTATTAGTTTGTTGTGCTCTTATCAGCATTGGTTTTGTCACAATTGGTCTATGGAATCACATGAGCTTGTTATCTTGCATTGTAAGAGGGATTGTTTGGATCTCTTTATCATTTTCCTTGATTCTTCAGAGACAAAAATGGGTGAAGACTCTCAGCACTTTCTGGTGGATATGTTCTTCTATTTTGGTGTCAATTTTGGATATTGAAATTCTTTTCAAGGATCATGCAATTGAGGTTCTTGATGTGGTGCTTTGGCTTGTGAATTTGTTACTTCTATTATGTGCTTTTCAAAATCTTGGTTTCTTTGTCACACAAAGTGGTGGTAACCAAGGTGATGCAGATTTATCTGAGCCTCTTTTGGATCGAAAAGACGGCGAAAATGCACGAACAGGACTATGCAATGCTTCCATTTTGAGTAAATTGATCTTCTCTTGGATTAACCCTTTGCTCAAATTGGGTTACTCAAAGGCACTATCACTTGAAGACATTCCTTCAGTTGTTCCTGAAGATGAAGCAGATTCTGCACACCAAGTGTTTGTTCTTGCATGGGAGAATCTTTTAAGGGAAAAGAGAAAGAACAATAATAATAGTACCAAGAACTTGGTTCTTTGGTCTCTAGCTAGAGTTTACTTAAAAGAGAATCTTTTGATTGCAGTCTATGCATTGATTAGAACTATTTGTGTTGTGGTTTCTCCACTTATACTCTATGCTTTTGTGAACTATTCAAATAGAAGTAGCACTGAGAAAAATCTCAAAGATGGTCTTTCTATATTGGGGTGTTTGATTGTCACAAAGGTGTTTGAAACATTGTCTCAAAGACATTGGTTCTTTGATTCAAGGAGGTCAGGTATGAAGATGAGGTCTGCTCTGATGGTGGCAGTGTATCAGAAACAGCTAAGGCTTTCTAGCCCTGCTCGAATGAGGCACTCCGCCGGTGAAATTGTTAATTACATTGCGGTGGATGCATACAGAATGGGAGAGTTTCCTTGGTGGCTTCATGTAACATGGGCCTGTGTATTGCAGCTTATTATGTCTCTTATAGTCTTGTTCGGCGTTGTAGGTCTCGGTGCTCTGCCTGGCCTAATCCCTTTCATAATCTGTGGGCTACTCAATGTGCCATTTGCAAAGGTGATACAAAAGTCTCAGTCTCAGTTCATGTTAGCACAAGATGAGCGCTTAAGATCAACTTCAGAGATACTTAACAGCATGAAGATCATCAAGTTACAATCATGGGAGGAAAAATTCAAGAGCTTGGTTGAGTCGCTTCGCGCGAAAGAATTTATATGGTTGTCTAAGACACAGATCATGAAGGGTTATGGCTCAATTCTTTATTGGATGGCTCCTACAATTGTTTCTGCTGTTGTCTTCCTAGGATGTGTTCTGTTCCATAGTGCTCCATTGGATGCAGGGACAATTTTCACAGTTCTTGCAACATTGAGGATCATGTCGGAACCAGTTAGGATGATCCCTGAGGCTCTCTCTGTTCTTATCCAAGTTGTGGTATCTTTTGATCGGCTCAATACCTTTTTGCTTGCTGAAGAGTTAGACAGTAATGAAATTGTAAGGAGTGTTAAGCAAAGTTCAGTTGGTGACAACAATGCTGTAGAAATTGAAGGTGGAAACTTTACTTGGGATCAGGGATCAGTGTCCCCAACTTTAGCTGATGTGAATTTGGAGGTGAAATGGGGGCATAAAGTAGCAGTTGTTGGGCCAGTTGGAGGTGGAAAATCATCTCTCTTGCATGCAATACTTGGAGAGATTCCAAAGATTTCAGGAAATGTTAATGTATATGGCACCATAGCATATGTTTCTCAAATTTCTTGGATCCAAAGTGGGACAGTTAGAGATAACATACTCTTTGGCAAGCCAATGGACAAGAAAAGATATCAGAATACCATTAAGGCCTGTGCCTTGGATAAGGACATCAATGATTTCAGCCATGGTGATCTGACAGAAATCGGTCAGAGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTGTACAATGATGCTGACATTTATCTCTTTGATGATCCTTTCAGTGCAGTTGATGCCCACACTGCTGCTCATTTATTCAATGAATGTGTCATGACAGCTCTTAGGGAAAAAACAGTCATTTTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATAAAATCCTGGTGATGGAGGGAGGGAAAATTACTCAGTCAGGTAGTTATGATGATATCCTAACAGCCGGGACAGCATTCGAACAACTTGTGACTGCTCACAAAGATGCAATAACAGAGTTTGATCGGAACAACCAAAACCAAGGAGGACCTGAAAATAATAAGGCTATGACTCCTCCAGAAGAGTCTCAAGGTTCTAATATCTCTAAAACTCAAAGTGAGGGTGAGATTTCTTTCAAGGGTCAAACTGGCTCACAACTCACACAAGAGGAAGAGACAGAGATTGGTGATCTTGGGTGGAAACCATTTTGGGATTACATTTCCTTCTCCAAGGGGCAACTTATGCTGTGCTTGATGATATTAGGACAATTTGCTTTTGTTGCTTTGCAATCTGCATCAACCTTTTGGCTTGCACTAGCAATTGAGATGCCAAAAGTGACTAGTGCTGTTTTGATTGGAGTTTATGCATTGGTCTCATTTAGCAGTGCTATTTTTGTGTATCTGAGGTCTTTGGTATCTGCACTTCTTGGATTAAAAGCTTCATCAGCCTTCTTCTCTAGTTTCAATAAGGCTATCTTCAGTGCTCCTATGTTGTTCTTTGATTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTGAGTATTCTGGACTTTGACATACCTTATTCCATCACTTTTGTAGCATCTGTAGCTATTGAAATTGTGGTGATCATTGGTATAATGGCTTCAGTCACATGGCAAGTTCTCATAGTTGCAATTCCTGCTACACTAGCATCAAAATATGTTCAGGGATATTATCAAGCCTCTGCAAGAGAAATAATAAGGATCAATGGAACAACCAAAGCACCAGTGATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTTAGAGCATTCAACATGGTGGATAGATTTGTCAAGAACTACCTAAAGCTTGTGGACACAGATGCATCACTATTCTTTCATTCTAATGTGACCATGGAATGGTTAATTATAAGGATTGAAACACTTCAAAACTTGACAGTCTTCACTGCAGCCTTGTTACTTATTCTAGTTCCTATGGATTATGTGTCCCCAGGGCTTGTGGGACTTTCACTTTCTTATGCATTCACATTGACACAAGCACAAATATTTTGGACAAGATGGTTTTGCAACTTATCAAACTATGTTATCTCTATTGAAAGAATCAAACAATTCATTCACATACCAGCTGAGCCTCCTGCTATTGTGGAGGATAACAGGCCTCCAACTTCATGGCCATGGAAGGGTAGAATCGATCTTCAATCCTTAGAGATTAGATATCGTCCGAATGCACCAATAGTCCTGAAAGGAATTACTTGCACATTCAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACAGGAAGTGGAAAAACAACACTTATAAGTGCTCTGTTTCGATTGGTCGAGCCTTCAAGAGGTAACATTATTATTGATGGGATTGACATATGCTCATTGGGGTTGAAGGATTTGAGAATGAAGCTAAGCATTATCCCTCAAGAAGCAACTCTTTTCAAGGGTAGCATTAGAACAAACTTGGACCCTTTAGGCCTTTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAGTGTCAACTTAAGGAGGCAATCAGCAAGCTACCAAGTCTCTTGGACTCATCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGCGGCAACTGTTTTGTCTTGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTTCTTGATGAAGCAACTGCATCCGTTGATTCTGCTACAGATGCCATTCTACAAAGAATTATTAGAGAAGAATTTGCAGAATGCACTGTAATAACTGTGGCTCACAGAGTTCCAACTGTTATAGACAGTGACATGGTCATGGTCCTATCTTATGGGAAACTACTGGAATATGATGATCCCTCAAAGCTTATGGAGACGAACTCATCATTCTCTAAGCTTGTAGCTGAATATTGGGCAAGTTGCAAGAGGAGTTCTTCTCAAATCTAA 4431 0.3979 MAYYGNTIGDDFTSWSSCLKNFDFTSLCTQRSIVGITNLLFVFMFYTVLLISFIKRSSSRNGNTSHRRKNKFFIFVLVCCALISIGFVTIGLWNHMSLLSCIVRGIVWISLSFSLILQRQKWVKTLSTFWWICSSILVSILDIEILFKDHAIEVLDVVLWLVNLLLLLCAFQNLGFFVTQSGGNQGDADLSEPLLDRKDGENARTGLCNASILSKLIFSWINPLLKLGYSKALSLEDIPSVVPEDEADSAHQVFVLAWENLLREKRKNNNNSTKNLVLWSLARVYLKENLLIAVYALIRTICVVVSPLILYAFVNYSNRSSTEKNLKDGLSILGCLIVTKVFETLSQRHWFFDSRRSGMKMRSALMVAVYQKQLRLSSPARMRHSAGEIVNYIAVDAYRMGEFPWWLHVTWACVLQLIMSLIVLFGVVGLGALPGLIPFIICGLLNVPFAKVIQKSQSQFMLAQDERLRSTSEILNSMKIIKLQSWEEKFKSLVESLRAKEFIWLSKTQIMKGYGSILYWMAPTIVSAVVFLGCVLFHSAPLDAGTIFTVLATLRIMSEPVRMIPEALSVLIQVVVSFDRLNTFLLAEELDSNEIVRSVKQSSVGDNNAVEIEGGNFTWDQGSVSPTLADVNLEVKWGHKVAVVGPVGGGKSSLLHAILGEIPKISGNVNVYGTIAYVSQISWIQSGTVRDNILFGKPMDKKRYQNTIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAHLFNECVMTALREKTVILVTHQVEFLSEVDKILVMEGGKITQSGSYDDILTAGTAFEQLVTAHKDAITEFDRNNQNQGGPENNKAMTPPEESQGSNISKTQSEGEISFKGQTGSQLTQEEETEIGDLGWKPFWDYISFSKGQLMLCLMILGQFAFVALQSASTFWLALAIEMPKVTSAVLIGVYALVSFSSAIFVYLRSLVSALLGLKASSAFFSSFNKAIFSAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVAIEIVVIIGIMASVTWQVLIVAIPATLASKYVQGYYQASAREIIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFVKNYLKLVDTDASLFFHSNVTMEWLIIRIETLQNLTVFTAALLLILVPMDYVSPGLVGLSLSYAFTLTQAQIFWTRWFCNLSNYVISIERIKQFIHIPAEPPAIVEDNRPPTSWPWKGRIDLQSLEIRYRPNAPIVLKGITCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPSRGNIIIDGIDICSLGLKDLRMKLSIIPQEATLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKEAISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASVDSATDAILQRIIREEFAECTVITVAHRVPTVIDSDMVMVLSYGKLLEYDDPSKLMETNSSFSKLVAEYWASCKRSSSQI* 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0221 1476 CDD ABCC_MRP_domain1 610 810 - -
Amo09g0221 1476 MobiDBLite consensus disorder prediction 842 891 - -
Amo09g0221 1476 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 102 1474 - -
Amo09g0221 1476 Gene3D - 585 856 IPR027417 -
Amo09g0221 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo09g0221 1476 SUPERFAMILY ABC transporter transmembrane region 901 1212 IPR036640 GO:0005524|GO:0016021
Amo09g0221 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 832 IPR027417 -
Amo09g0221 1476 Gene3D ABC transporter type 1, transmembrane domain 258 584 IPR036640 GO:0005524|GO:0016021
Amo09g0221 1476 Gene3D ABC transporter type 1, transmembrane domain 879 1211 IPR036640 GO:0005524|GO:0016021
Amo09g0221 1476 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 102 1474 - -
Amo09g0221 1476 SUPERFAMILY ABC transporter transmembrane region 278 581 IPR036640 GO:0005524|GO:0016021
Amo09g0221 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1464 IPR003439 GO:0005524
Amo09g0221 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 833 IPR003439 GO:0005524
Amo09g0221 1476 Gene3D - 1213 1464 IPR027417 -
Amo09g0221 1476 CDD ABC_6TM_ABCC_D2 914 1205 IPR044726 GO:0140359
Amo09g0221 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo09g0221 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1463 IPR027417 -
Amo09g0221 1476 CDD ABC_6TM_ABCC_D1 291 581 IPR044746 GO:0140359
Amo09g0221 1476 Pfam ABC transporter transmembrane region 291 560 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo09g0221 1476 Pfam ABC transporter transmembrane region 932 1179 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo09g0221 1476 SMART AAA_5 637 810 IPR003593 -
Amo09g0221 1476 SMART AAA_5 1256 1449 IPR003593 -
Amo09g0221 1476 ProSitePatterns ABC transporters family signature. 735 749 IPR017871 GO:0005524
Amo09g0221 1476 CDD ABCC_MRP_domain2 1228 1448 - -
Amo09g0221 1476 Pfam ABC transporter 628 762 IPR003439 GO:0005524
Amo09g0221 1476 Pfam ABC transporter 1247 1395 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0221 Amo-Chr9 2489299 2496158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0221 610 854 Calmodulin-binding Proteins AT2G36910 25.283 1.05e-19 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0221 - - gmx:100784827 2108.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0482 19 6926258 6932445 Amo09g0221 09 2489299 2496158 hybridization