Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0207 ATGGCAAAAGATGATGATGAAATGCCTAAGATCCTTCATGGAACAATTGAAGCTACCATCTTCAATGCCTCATCACCTCCCTCTTCTTCTTCATTTCCCTTCAAGTGTCTATGTTTAAAAGCAGAAAAACCAGCTTATGTGACAATCAAGATAGACAAGAACAAGGTTGCAAAAACAATTGAAGACATTGATCGTGTATGGAACCAAACCTTCAAGATCCAATGTGCATACCCAATTGATTCAACAATCACAATAACACTCAAAACAAAAACTTGCACATTAGGAAAGTACCACATAAAAGGCCAAAAGCTTCTAGAAGAAGGAGGCTTAATCAATGGATTCATCCCTCTACTAATGGAAGATAATAATGGGAAAAGACCAAACCAACAAAAACTCAAATTGAAGTTCCAATTGTGGTTCAATTCAGCTGAAGAATTATTGGAACCAATAAGTTGGGCAAAGATAATGAGGTTTGGGAATTCTTGTCAAGGAATGAGAGATTCTTGTACTACATTTCCACAAAGGTCTAATTGTTATGTGAAACTATATCATGATGCTCATCATTGTTCTACTTTTCAACCAAATATTGGTTTATTATGTGAAGCTCCAAGGAAGCTATGGGAGGATGTGTATAAAGCTATTGAGGGTGCAAAGCATATAATTTATATTGCAGCCTGGTCCCTCAATCCAAACTTGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCCAAAGGAATAAAGCTTGGTGATTTATTGAAGAAGAAAGCAGAGGAAGGTGTTGCTGTGAGGATTATGCTTTGGGATGATGAAAAATCTTTGCCCTTTATTAAGAAGAACAAAGGTGTAATAACAAACAGTAATAATACACAACATCATGATGATGATGATGATGATGATAATGATGATGCTTTTGCTTACTTCAAGAAAACAAGAGTAATATGCACAAAATGTCCTAGGTTGCACCACAAATTCCCAACACTCTTTTCTCACCACCAAAAGACTATAACATTGGACACAAAATCACCAAATAATTCTAGTGATGATGATGGTGAAGATGAGAGAGAACTAATGAGCTTTTTGGGAGGATTAGATTTGTGTGAAGGAAGATATGACACTGAGCAACATTCATTGTTTCACACACTGATTAGGGAATCACATTGTTATGATTTTTACCAACCAAACATTGGAGGAGCTAGTCTTAACAAAGGAGGGCCAAGAACACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCTTGGGATGTGTTGACCAACTTTGACCAAAGGTGGAGAAAGCAATGTGATTCTTCTTTTCTTGTTCCTACTACCACCATTGCAAATGTTCTTGGGCCAAGGAATAGCACAACTTCAAACACCTCCATAGACAAGGATTGGAATTGGAAAGTTCAAGTATACAGGTCAATTGATGATGTGTCAGCTAGCTTCCAAAGCCAATCATTTAGAGAGTTACATGTAGAAAGGAGCATCCATGAGGCTTATGTTGAAGCAATAAGAAGTGCTGAAAAGTTTATATACATTGAGAATGAATATTTCATTGGAGGGTGCCAATTATGGGACAAAGATAGGGATAGTGGATGCACAAACCTAATCCCAATTGAAATTGCACTCAAAATTGTTAGCAAGATCAAAGCAAAAGAGAGGTTTGCAGTGTACATAGTGATACCAATGTGGCCAGAGGGAGTGCCTAAAAGTGAAGCAGTTCAAGATATATTGCATTGGACTAGAGAAACTATGACTATGATGTATAGGTTAATTGGAGAAGCATTGAAGGAGAATGGGGTGAATAATAATAATGGTCACCCTAAAGATTATTTGAATTTCTTTTGCCTTGCAAATAGGGAACAAAAGGGGAGTGGGGAGTATATTCCACAACATGCTCCTCATCCTGGAACACTTTATGGGAATGCACAAAGTAATAGGAGGTTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGATGAATACATACTAATAGGATCAGCAAATGTGAACCAAAGATCCATGGATGGAGAAAGGGACAGTGAGATTGCCATAGGCTGCTACCAATTGTCTCAAGATAATAAACATGAAGGTATGAGCCGTGGTGAGATTCATGCATTTAGAATGTCACTATGGTATGAACACACTGCTAGTAGTGCCAATTATGACTTGTTCTTGGAGCCACAAAGCTTGGAATGTGTCAACATTATGCGTTCAATTGGTGACAAAATGTGGCAAATTTACATCAATGATGAAATTGTGGACATGGAAGGTGTGCACCTTGTGACTTACCCTATAAGTGTGACACAAGATGGGTGTGTCAAGGATCTTTCTGATGGAGTTCGTTTTCCTGACACAAATTCTAGAGTGAAGGGAAAGAGATCTCAAACTTTGCCCCCCAACTTTACAAATTAA 2433 0.381 MAKDDDEMPKILHGTIEATIFNASSPPSSSSFPFKCLCLKAEKPAYVTIKIDKNKVAKTIEDIDRVWNQTFKIQCAYPIDSTITITLKTKTCTLGKYHIKGQKLLEEGGLINGFIPLLMEDNNGKRPNQQKLKLKFQLWFNSAEELLEPISWAKIMRFGNSCQGMRDSCTTFPQRSNCYVKLYHDAHHCSTFQPNIGLLCEAPRKLWEDVYKAIEGAKHIIYIAAWSLNPNLVLVRDPQTEIPHAKGIKLGDLLKKKAEEGVAVRIMLWDDEKSLPFIKKNKGVITNSNNTQHHDDDDDDDNDDAFAYFKKTRVICTKCPRLHHKFPTLFSHHQKTITLDTKSPNNSSDDDGEDERELMSFLGGLDLCEGRYDTEQHSLFHTLIRESHCYDFYQPNIGGASLNKGGPRTPWHDAHACVIGEAAWDVLTNFDQRWRKQCDSSFLVPTTTIANVLGPRNSTTSNTSIDKDWNWKVQVYRSIDDVSASFQSQSFRELHVERSIHEAYVEAIRSAEKFIYIENEYFIGGCQLWDKDRDSGCTNLIPIEIALKIVSKIKAKERFAVYIVIPMWPEGVPKSEAVQDILHWTRETMTMMYRLIGEALKENGVNNNNGHPKDYLNFFCLANREQKGSGEYIPQHAPHPGTLYGNAQSNRRFMVYVHSKFMIVDDEYILIGSANVNQRSMDGERDSEIAIGCYQLSQDNKHEGMSRGEIHAFRMSLWYEHTASSANYDLFLEPQSLECVNIMRSIGDKMWQIYINDEIVDMEGVHLVTYPISVTQDGCVKDLSDGVRFPDTNSRVKGKRSQTLPPNFTN* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0207 810 Gene3D Endonuclease Chain A 193 477 - -
Amo09g0207 810 SUPERFAMILY Phospholipase D/nuclease 466 730 - -
Amo09g0207 810 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Amo09g0207 810 Pfam Phospholipase D C terminal 729 799 IPR024632 -
Amo09g0207 810 Gene3D Endonuclease Chain A 492 702 - -
Amo09g0207 810 MobiDBLite consensus disorder prediction 796 810 - -
Amo09g0207 810 PANTHER PHOSPHOLIPASE D 7 809 IPR015679 -
Amo09g0207 810 SMART pld_4 328 371 IPR001736 GO:0003824
Amo09g0207 810 SMART pld_4 653 680 IPR001736 GO:0003824
Amo09g0207 810 PANTHER PHOSPHOLIPASE D ALPHA 7 809 - -
Amo09g0207 810 PIRSF PLD_plant 1 810 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Amo09g0207 810 MobiDBLite consensus disorder prediction 791 810 - -
Amo09g0207 810 SUPERFAMILY Phospholipase D/nuclease 174 442 - -
Amo09g0207 810 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 121 IPR035892 -
Amo09g0207 810 Pfam Phospholipase D Active site motif 656 680 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0207 Amo-Chr9 2270457 2275942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0207 35 809 Phospholipase D Gene Family (Wang group) AT1G55180 57.161 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0207 K01115 - gmx:100812642 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0489 19 7184435 7189950 Amo09g0207 09 2270457 2275942 hybridization
Amo19g0489 19 7184435 7189950 Amo09g0207 09 2270457 2275942 PCT
Amo09g0207 09 2270457 2275942 Amo19g0489 19 7184435 7189950 PCT
Amo09g0207 09 2270457 2275942 Amo09g0207 09 2270457 2275942 PCT