Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0196 ATGGGTTCAAGAGCCCAATATCTTTTCGGGTTAGGTCCAAGCCCAAGACTACGCCCAAGCCCAATTATGACTGAGGCTCCTAATAAAAGCCTAAAACGTAAAACCCTCAACTCTCTCGTTTCGAGCATCAGCAGCTGCCACCACCATCATCATCATCGTGCAGCAGATCCAGCTTCACCAATGGTTTATGTTAAGGCTCAGAAAGGTAAGGCCTACTTCAAAAGGTATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAGACTGACTACCGGGCCAGGATTCGGTTGATTAACCAAGATAAGAACAAGTACAACACACCTAAATACCGTTTTGTTGTGCGATTTACAAACAAGGATATCGTTGCACAAATAACATCTGCTAGCATTGCCGGTGATATTGTTCTTGCTGCAGCTTATTCCCATGAGCTGCCTCGCTATGGCCTTGAAGTCGGTCTTACTAACTATGCTGCAGCTTATTGCACTGGACTTCTTCTTGCCCGCCGAGTCCTTAAAATGCTTGAGATGGATGAGGAGTATCAAGGGAATGTAGAGGCAAGTGGTGAGGATTTTTCTGTTGAACCTGCTGACACAAGGAGGCCATTCCGTGCTCTCCTCGATGTTGGTCTTATTAGGACCACAACTGGAAACCGTGTGTTTGGTGCCCTTAAGGGAGCCTTGGATGGGGGTTTGGATATCCCTCACAGTGAGAAAAGGTTTGCTGGTTTTGATAAGGAGAAGAAGGAGCTTGATCCTGAGGTTCACCGCAAATATATCTTTGGTGGACATGTTGCTGCCTATATGAAGACTTTGGAGGAAGATGAACCAGAGAAATACCAATCACATTTCAGTGAATATATCAAGCGTGGACTCAGTGCCGATGGAATTGAGCCATTGTATAAAAAGGTTCATGCGGCCATTCGTGCAGATCCCACCATCAAGAAGTCAGAGAAGCAGCCACCAAAGGAACACAAAAGGTACAACTTGAAGAAGCTTACATATGAGGAGAGGAAGGCTAAGTTGATTGCACGCCTGCAGGCCCTCAACTCTGCAGCTGGTGGTGAAGATGAGGATGACGATGATGACGAGTGA 1089 0.461 MGSRAQYLFGLGPSPRLRPSPIMTEAPNKSLKRKTLNSLVSSISSCHHHHHHRAADPASPMVYVKAQKGKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQITSASIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYQGNVEASGEDFSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSEKRFAGFDKEKKELDPEVHRKYIFGGHVAAYMKTLEEDEPEKYQSHFSEYIKRGLSADGIEPLYKKVHAAIRADPTIKKSEKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAAGGEDEDDDDDE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0196 362 CDD Ribosomal_L18_L5e 101 230 - -
Amo09g0196 362 Pfam Ribosomal L18 C-terminal region 295 348 IPR025607 -
Amo09g0196 362 Hamap 50S ribosomal protein L18 [rplR]. 74 306 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 74 235 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 PRINTS Ribosomal protein L5 signature 204 223 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 PRINTS Ribosomal protein L5 signature 103 122 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 PRINTS Ribosomal protein L5 signature 224 243 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 PRINTS Ribosomal protein L5 signature 266 286 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 PRINTS Ribosomal protein L5 signature 144 164 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 PRINTS Ribosomal protein L5 signature 80 99 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Amo09g0196 362 Gene3D - 61 351 - -
Amo09g0196 362 PANTHER PROTEIN L5, PUTATIVE-RELATED 61 358 - -
Amo09g0196 362 SUPERFAMILY Translational machinery components 71 312 - -
Amo09g0196 362 Coils Coil 330 350 - -
Amo09g0196 362 PANTHER RIBOSOMAL PROTEIN L5-RELATED 61 358 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0196 Amo-Chr9 2061970 2064644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0196 61 352 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.192 0.0 504