Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0163 ATGGATATCACCGACACGCAACGGAATAGTAACACTGAAAGTGATCTATGTCCATTGCTGATGGAGCAGCTGGTATCCCGCAATGATCATCAGCACATAATTGATATTGCAAGGAACAATGATGGGTTATCCAACTCATCTAATAATCAACGCCCTGCAGTGCATGAAAATCAACCTAGTGTCAGCACGGATGTCCATACCCGTGAAACAGCTTCATTTGCTTCACCTAGATTTAGTCCTAGAAGTTCCACATTGACAAGAGGAGAGGGGTACAATCATCGCAGAAGGAGCCCACTAAATTCTGGTCTATGGGTCTCTGTTGAGCTTTTTGTCACTGTGGGTCAGATCATAGCATCTGTTGTTGTCTTGTCAATGTCAAGAGATGAACATCCCCAAGCCCCATTGTTTGCATGGATTGTGGGTTATGCAGCTGGTTGTGTTGCTACTCTTCCTATTCTTTACTGGCGATATCAAAACTATAATCAAATTGCGGAACCAGATATATCTCAATCATCTCAAGGATCTTCTTTAAGTAACCCTTCAGAAACTACTTATACTGCCATATCTGTTACCCATAATTCGAACAGCGACAATAGTCACACTACAGAATTGTCTGCAGGAAGTGCTAGAATTCCTGCAGTGTTTAGTTCTAGGTTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTCGTTGGCAATGTGTGGATCTTTGGAGGTCACACTTCTCCTTCCGATGCTCCAAAATTGTATAGGTTATGTATAGTCTTCCTTACCTTCAGCTGCATCGGATATGCCATGCCCTTTATACTCTGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTCTTCGGCATTCCTGAGGATTTTTCACCAAACAGAGGAGCCTCAATAGAATCCATTAACGCTCTGCCAGTCTACAAGTTCAAATTGAAGAAAAATGAAAATAGTGGTGTTGAGGATGTCAATACCACTGCTGAAGATGACGGTGGAATTTTAGCTGCTGGGACTGAAAAGGAACGGCCTATATCAGGAGAAGATTCTGCTTGCTGCATTTGCTTGGCAAAATATGTAGACAACGACGAACTTCGGGAGCTACCATGCTTTCATATCTTTCATGTAGGGTGTATTGATAAATGGTTAAAGATAAATGCATCCTGTCCTCTTTGTAAATATGAAGTTGGTACAAACAATGAAGGTGCACATTCGGCCATGGGTTCCAATCAGCATTAG 1263 0.4188 MDITDTQRNSNTESDLCPLLMEQLVSRNDHQHIIDIARNNDGLSNSSNNQRPAVHENQPSVSTDVHTRETASFASPRFSPRSSTLTRGEGYNHRRRSPLNSGLWVSVELFVTVGQIIASVVVLSMSRDEHPQAPLFAWIVGYAAGCVATLPILYWRYQNYNQIAEPDISQSSQGSSLSNPSETTYTAISVTHNSNSDNSHTTELSAGSARIPAVFSSRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVFGIPEDFSPNRGASIESINALPVYKFKLKKNENSGVEDVNTTAEDDGGILAAGTEKERPISGEDSACCICLAKYVDNDELRELPCFHIFHVGCIDKWLKINASCPLCKYEVGTNNEGAHSAMGSNQH* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0163 420 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 411 - -
Amo09g0163 420 MobiDBLite consensus disorder prediction 39 94 - -
Amo09g0163 420 CDD RING-H2_RNF111_like 360 401 - -
Amo09g0163 420 Pfam Ring finger domain 359 401 IPR001841 -
Amo09g0163 420 SUPERFAMILY RING/U-box 355 406 - -
Amo09g0163 420 SMART ring_2 360 400 IPR001841 -
Amo09g0163 420 MobiDBLite consensus disorder prediction 39 87 - -
Amo09g0163 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 410 IPR013083 -
Amo09g0163 420 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Amo09g0163 420 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0163 Amo-Chr9 1714331 1718329 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0163 1 405 C3H Transcription Factor Family AT1G80400 54.217 2.92e-157 448