Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0123 ATGACTAAGGTCTCTCGTTCAAACAAAAACTCTAAATCCCAAAACACTAATCCCATTAGAAAACGAAGAAAGATCACCAAGAAGACGAAGAATGTTGATTCCAGTGAACCATTCTGTTGCCCAATCTGCATCCAGACCAAAATAAAAAAGAAATCTTTTACCACAGTCAGTTGCAACCACTCACTCTGTACAACTTGCATGGTAAGGTACGTTTCTTCACAGGTTCATCGCGTTAAAATTCCTTGTCCGATTTGCATGGACTGTTATTTGAATATGGAGGATTGCCGCAATATTCTTCCAAAGAAGGTTTTCGATCTGTGGGGAAAATTATTGTGTGAAGCAGCGATACCTGAGGCTGACAAATTCTATTGTCCCTTTAAGAACTGTTCTGCGCTCATGATCGATGACGGTGAGTGCAGAAAATTGGCCAAAAAATTTAAATGTCCTCATTGTGATGGAATGTTTTGTGCACAGTGCAAGGTTGCTTGGCACCATGGAATCAGGTGCAAGGAGTTTCAGGGCAGTAATGGGGATGTTATGATGATGGGGTTGGCGAAGGAGAAGAGTTGGCAGAGGTGTCCTAATTGCAAGTTATACGTTGAGAAAAATGGTGGGTGCAAATCCATGTTTTGTAGAAAAATAAGTGAAAGAAGCAATTGGATCCACACAATGACTAAGGTCTCTAGTTCAAACAAAAACTCTAAATCCCAAAACACTAATCCTGTTAGAAAACGAAGAAAGATCGCCAAAACGGAGAATGTCGATTCCTCCAACACCAACACCAATAGTGAACCATTCTTTTGCAAAATCTGCATCGAGACCAAAACAAAAAAGGAATCTTTTACCACAATCAGTTGTAACCACTCATTCTGTACAACTTGCATGGTAAAGCACGTTTCCTCACAGGTTCATCGCGTTAAAATTCATTGTCCAATTTGCGTGGACCGTTATTTGAACGTCGAGGAATGCCGCAATATTCTTCCAAAGAAGGTTCTCGATCTGTGGGAAAAATTATTGTGCGAAGCCGGGATACCTGAGACTGACAAATTCTATTGTCCCTTTAAGGACTGTTCTGCGCTCATGATCGATGACGGTGACCACAATGGCAGAAAATTGGCCAGAAAATTTAAGTGTCCTCATTGTGATAGAATGTTTTGTGCAGAGTGCAAGGTTGCTTGGCACCATGGAATCAGGTGCAAGGAGTTTCAGAGTCGTAACAAAGACAGGATGGAGAAGGAGGATGTTATGCTGATGGGGTTGGCGAAGAAACAGAGTTGGCAGAGGTGCCCTAATTGCAACTTCTACGTTGAGAAAAGTGATGGGTGCCCATCCATGATATGTAGAAAGTGGGTTAATGATTAG 1362 0.4163 MTKVSRSNKNSKSQNTNPIRKRRKITKKTKNVDSSEPFCCPICIQTKIKKKSFTTVSCNHSLCTTCMVRYVSSQVHRVKIPCPICMDCYLNMEDCRNILPKKVFDLWGKLLCEAAIPEADKFYCPFKNCSALMIDDGECRKLAKKFKCPHCDGMFCAQCKVAWHHGIRCKEFQGSNGDVMMMGLAKEKSWQRCPNCKLYVEKNGGCKSMFCRKISERSNWIHTMTKVSSSNKNSKSQNTNPVRKRRKIAKTENVDSSNTNTNSEPFFCKICIETKTKKESFTTISCNHSFCTTCMVKHVSSQVHRVKIHCPICVDRYLNVEECRNILPKKVLDLWEKLLCEAGIPETDKFYCPFKDCSALMIDDGDHNGRKLARKFKCPHCDRMFCAECKVAWHHGIRCKEFQSRNKDRMEKEDVMLMGLAKKQSWQRCPNCNFYVEKSDGCPSMICRKWVND* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0123 453 ProSiteProfiles TRIAD supradomain profile. 36 242 IPR044066 -
Amo09g0123 453 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 223 - -
Amo09g0123 453 Pfam IBR domain, a half RING-finger domain 119 169 IPR002867 -
Amo09g0123 453 Pfam IBR domain, a half RING-finger domain 346 399 IPR002867 -
Amo09g0123 453 SUPERFAMILY RING/U-box 262 345 - -
Amo09g0123 453 MobiDBLite consensus disorder prediction 1 33 - -
Amo09g0123 453 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Amo09g0123 453 SUPERFAMILY RING/U-box 414 447 - -
Amo09g0123 453 SMART ring_2 268 313 IPR001841 -
Amo09g0123 453 SMART ring_2 40 85 IPR001841 -
Amo09g0123 453 ProSiteProfiles Zinc finger RING-type profile. 40 85 IPR001841 -
Amo09g0123 453 ProSiteProfiles Zinc finger RING-type profile. 268 313 IPR001841 -
Amo09g0123 453 Pfam Zinc finger, C3HC4 type (RING finger) 40 85 IPR018957 GO:0046872
Amo09g0123 453 Pfam Zinc finger, C3HC4 type (RING finger) 268 313 IPR018957 GO:0046872
Amo09g0123 453 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 232 449 - -
Amo09g0123 453 Gene3D - 396 449 - -
Amo09g0123 453 SMART ibrneu5 105 169 IPR002867 -
Amo09g0123 453 SMART ibrneu5 333 399 IPR002867 -
Amo09g0123 453 SUPERFAMILY RING/U-box 345 404 - -
Amo09g0123 453 MobiDBLite consensus disorder prediction 1 15 - -
Amo09g0123 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 119 IPR013083 -
Amo09g0123 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 346 IPR013083 -
Amo09g0123 453 MobiDBLite consensus disorder prediction 226 257 - -
Amo09g0123 453 SUPERFAMILY RING/U-box 179 211 - -
Amo09g0123 453 ProSiteProfiles TRIAD supradomain profile. 264 453 IPR044066 -
Amo09g0123 453 SUPERFAMILY RING/U-box 34 118 - -
Amo09g0123 453 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 223 IPR031127 GO:0004842|GO:0016567
Amo09g0123 453 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 232 449 IPR031127 GO:0004842|GO:0016567
Amo09g0123 453 SUPERFAMILY RING/U-box 110 173 - -
Amo09g0123 453 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0123 Amo-Chr9 1169157 1174585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0123 179 448 C3H Transcription Factor Family AT2G19610 25.090 3.15e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0123 K11975 - eus:EUTSA_v10021980mg 310.457