Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0067 ATGTCGTCTCCGGCGCCGGAGACTCCTCCAGGAACTAACTCCACCGCCGCATCTCCTCCTTCCCCGTCTGCCGCATCTCCGCCGTCTCCGGTTGCATCCACCCCGACGACCAATGTCACCGCCTCCCCGCCGTCGCCGGCGCTCGTATCCACCGCTCCTACCTCGGTGAACTCTACTCCGTTTATGCCATTGACTCCGGCGGATTCCGGTGGGTTGGCGAAGGGGACATTGACCGGAATCATAATAGGGGCGGTTTTGGGTTCGACGGCGATGCTTATTATTGGGGGCATTTTCGTCTTTTTCTACAGGAGGGCGAAGAGGAAGAGGAATCAGGGTTTTGAGAAGAGCAACTACTATGGTGCTCTTCCTCAACCAAAAGTTGACCAGGGTAGTGGCTTACCTCAGCAATGGCAAAGTACTCCTTCTCCTTCTACAGATGGTAAAGGAGGGYTGCCTCCGAAACCCCCTGGGGTTGTGGCAAATCACCAAAAGTCGTCATCTGCTGGTAGTCTTCCCACATATTCTTCAGCTACCAGCAGTGGTATTGGGTCTGAGCGGCCATACATGTCTCAGTCTTCTGGCATGTCCTTGTCTCTATCTCAGAGTACTTTTACATATGATGAGTTAGCAATGGCAACAGAAGGGTTCTCCGGCTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTTCCAAATGGAAAAACTGTTGCTGTTAAGCAGCTGAAATCCGAGAGTAAACAGGGGGAGCGTGAGTTTCATGCAGAAGTCGAKGTCATTAGCCGTGTCCATCACAGGCATCTTGTTTCCCTAGTTGGATATTGCGTCTCAGGTGGCCAAAGGATGCTTGTTTATGAGTTTGTGCCAAATAAAACACTTGAGTTTCATTTGCATGCAAAGGACAGACCGACTATGGACTGGTCAACGAGGATGAAGATTGCAGTTGGAGCTGCAAAGGGATTGGCCTACCTGCATGAGGATTGTCACCCTAAAATCATACATCGGGACATTAAAGCATCTAACATCCTTATTGATGATAGTTTTGAGGCAAAGGTTGCAGATTTTGGACTAGCCAAATTTTCAACAGACACAGATACCCATGTCTCTACTCGAGTGATGGGAACCTTTGGATACCTGGCTCCTGAATATGCTGCTAGTGGGAAACTCACAGAGAAGTCAGATGTTTTCTCCTATGGTGTTGTGCTTTTGGAGTTGATTACCGGTCGAAAACCTGTTGATAAAACTGAATCTTTCACAGATGACAGCATGGTTGAATGGGCAAGGCCCTTACTTTCCCAAGCTTTGGAAATTGGAAATTTTAGTGGACTTCTAGATCCAAGGTTGCAGACAAATTATGATCGTGAAGAGCTGACTCGAATGACTGCATGTGCCGCAACGTGTGTGCGCCATTCAGCCAGGCGCCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTAGAAGGAAATATTTCTCTAGAGGATCTGTACGAGGGGGGCACACCGGGGCACAGCAGAGTTTTTGGTTCCTTTGAGAGTTTAAACTATGACGCCGGTCAATACAATGAAGACCTAAAGAAGTTCAGGAAGCTGGCACTTGAAAGCCAAGAGCATGGCACTAGCGAGTACAGTGGACCGAGCAGCGAGTACGGTCAACATCCATCTGCTTCAACCAGTTCAGGCCTGCAAAACACACAAGAGACAGAAAGGATTTAA 1722 0.489 MSSPAPETPPGTNSTAASPPSPSAASPPSPVASTPTTNVTASPPSPALVSTAPTSVNSTPFMPLTPADSGGLAKGTLTGIIIGAVLGSTAMLIIGGIFVFFYRRAKRKRNQGFEKSNYYGALPQPKVDQGSGLPQQWQSTPSPSTDGKGGLPPKPPGVVANHQKSSSAGSLPTYSSATSSGIGSERPYMSQSSGMSLSLSQSTFTYDELAMATEGFSGSNLLGQGGFGYVHKGVLPNGKTVAVKQLKSESKQGEREFHAEVXVISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEFHLHAKDRPTMDWSTRMKIAVGAAKGLAYLHEDCHPKIIHRDIKASNILIDDSFEAKVADFGLAKFSTDTDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVVLLELITGRKPVDKTESFTDDSMVEWARPLLSQALEIGNFSGLLDPRLQTNYDREELTRMTACAATCVRHSARRRPRMSQVVRALEGNISLEDLYEGGTPGHSRVFGSFESLNYDAGQYNEDLKKFRKLALESQEHGTSEYSGPSSEYGQHPSASTSSGLQNTQETERI* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0067 573 Gene3D Transferase(Phosphotransferase) domain 1 292 498 - -
Amo09g0067 573 MobiDBLite consensus disorder prediction 160 194 - -
Amo09g0067 573 SUPERFAMILY Protein kinase-like (PK-like) 188 489 IPR011009 -
Amo09g0067 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Amo09g0067 573 Gene3D Phosphorylase Kinase; domain 1 179 291 - -
Amo09g0067 573 MobiDBLite consensus disorder prediction 539 573 - -
Amo09g0067 573 ProSiteProfiles Protein kinase domain profile. 216 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0067 573 MobiDBLite consensus disorder prediction 1 73 - -
Amo09g0067 573 MobiDBLite consensus disorder prediction 30 64 - -
Amo09g0067 573 Pfam Protein tyrosine and serine/threonine kinase 220 489 IPR001245 GO:0004672|GO:0006468
Amo09g0067 573 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 8 560 - -
Amo09g0067 573 MobiDBLite consensus disorder prediction 129 146 - -
Amo09g0067 573 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 8 560 - -
Amo09g0067 573 MobiDBLite consensus disorder prediction 116 194 - -
Amo09g0067 573 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524
Amo09g0067 573 MobiDBLite consensus disorder prediction 534 573 - -
Amo09g0067 573 SMART serkin_6 216 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0067 573 MobiDBLite consensus disorder prediction 13 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0067 Amo-Chr9 740762 745196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0067 13 535 Trihelix Transcription Factor Family AT1G70460 49.905 6.02e-161 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo09g0067 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0067 - - aip:107617256 1004.59