Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0060 ATGGAACTTGTTTTCAAAGAATCTCCCCATCCAGATGAAAGCCAAAGGAAACAACTGAGCAAGCAATTAGGCCTTGCTCCAAGTCAAGTCAAGTTTTGGTTCCAAAATCGTCGAAAAAAAAAACTAATTAATGCAATACAAGAGCGTCATGAAAGTTCGTTGTTGAAGAAAGAAATAGAGAAATTAATGGAGGAAAATAAGGCCAGTAGAGAGGCCATAAGCAAATCTTGTTGCCCTAACTGTGGCATGGCCATGGCCACCACTTCTACTATCACTGATGATAGCTCCACCATCTCCATTGAAGAACAACAACTTCGTTTAGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTACGAGAAGTTTCAGGGAAATACCCATCAGCTGGAACAATAATGTACCCTTCATGTTCTATACCAGATGCAATGAACCAAGCAATAGAGGAACTCATAAAGATGGCTACTATTAGAACCTTTATGGTACGTAGTGTTGAAACTGGTAGAGAAATACTCAACTATGATGAATATGAGAAGGTTTTGAGTCAAACACGTCCATTGAAGCATCAAAGAGAAAATGGAATTGTTTTTATGGATCTATCAAGTCTTGTCCAAAGTTTTCTAGATGTGTTGCAAATGCTGACACCAATGGTGCCAACAAGAGAAGTATATTTCGTGAGATGCTGCAGAAAGTTAAGTGATGAAAAGTGGGGAATTGTTGATGTTTCCATAGACAAAGTAGAAGACAACATCGATGCTTCCCTTCTTAAATGCAGAAAACGCCCTTCTGGTTGCATTATTGAAGATAAGTCTCATGGTCATTGCAAGGTAAGTTGGGTGGAACACTGGGAATGCGAGAAAAGCAGTGTCCACAGAATGTATAGAAGCATTGTGAATAACGGTACAGCGTTTGGGGCAAGGCACTGGATATCAACACTGCAGCTTCAATGTCAACGTCTTGTTTTCTTCATGGCAACTAATGTTCCCATCAAGGATTCAACTGGTGTTGCCACATCAGCTGGAAGAAAGAGCATATTGAAGTTAGGAGAAAGAATGAGATGGAGTTTTTGCCATGCAATTGGAGCCTCAAGCTTCCATACATGGACAAAGGTGACAAGTAAAAATGGAGAAGACATTAGGATCAGTTCTAGGAAGAACTTGAATGATCCTGGTCAACCTCTTGGTGTCATCCTATCAGCTGTTTCTTCTGTGTGGCTTCCTCTCCCTCCAAATGTTCTTTTTCATTTCTTGAGGGATGAAAATCATAGGTCTCAGTGGGATATCATGGTCACTGGTGGGTCATCGGTGCAGTCCATAGCAACATTAGCCAAAGGCCAAGATCGGGGCAATGCTGAGATTACATCAAAAGAAAACATCAAGTGGTGGATATTACAAGATAGCTCCACAAATGCTTATGAATCAATGGTAGTGTATGCTCCTGTGGACATTCCTAGCATGAAGAATGTGATGAATGGATGTGATTCAACCAACATTCCAATATTACCATCAGGGTTCTCAATTCTCCCTGATGGGGTTGATTCAAGGCCATTGATTACTWCTWCTACTAYKATGMWRMARCAACAASAASAARAWAWKAWKAMTRMWGWAGRAGGAGGRTCTTTGTTAACAATGGCATTCCAAGTAATTACTAATAATAATAGTAATGGTTCTCCATCATCAGCAAAATTGACTTTGGAGTCTGTGGAATCAGTCAAGAGTTTAGTTTCTTGTACATTAAGGAATATCAAATCATGTTTACAATGTGAAGAAGATTGA 1773 0.3914 MELVFKESPHPDESQRKQLSKQLGLAPSQVKFWFQNRRKKKLINAIQERHESSLLKKEIEKLMEENKASREAISKSCCPNCGMAMATTSTITDDSSTISIEEQQLRLENAKLKAEVEKLREVSGKYPSAGTIMYPSCSIPDAMNQAIEELIKMATIRTFMVRSVETGREILNYDEYEKVLSQTRPLKHQRENGIVFMDLSSLVQSFLDVLQMLTPMVPTREVYFVRCCRKLSDEKWGIVDVSIDKVEDNIDASLLKCRKRPSGCIIEDKSHGHCKVSWVEHWECEKSSVHRMYRSIVNNGTAFGARHWISTLQLQCQRLVFFMATNVPIKDSTGVATSAGRKSILKLGERMRWSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGQPLGVILSAVSSVWLPLPPNVLFHFLRDENHRSQWDIMVTGGSSVQSIATLAKGQDRGNAEITSKENIKWWILQDSSTNAYESMVVYAPVDIPSMKNVMNGCDSTNIPILPSGFSILPDGVDSRPLITXXTXMXXQQXXXXXXXXXGGSLLTMAFQVITNNNSNGSPSSAKLTLESVESVKSLVSCTLRNIKSCLQCEED* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0060 590 SUPERFAMILY Bet v1-like 362 547 - -
Amo09g0060 590 Pfam Homeodomain 1 40 IPR001356 GO:0003677
Amo09g0060 590 ProSiteProfiles START domain profile. 173 321 IPR002913 GO:0008289
Amo09g0060 590 SUPERFAMILY Bet v1-like 209 318 - -
Amo09g0060 590 SMART START_1 141 318 IPR002913 GO:0008289
Amo09g0060 590 CDD homeodomain 1 40 IPR001356 GO:0003677
Amo09g0060 590 PRINTS Lambda-repressor HTH signature 24 40 IPR000047 GO:0003677
Amo09g0060 590 PRINTS Lambda-repressor HTH signature 15 24 IPR000047 GO:0003677
Amo09g0060 590 Gene3D - 1 41 - -
Amo09g0060 590 ProSiteProfiles 'Homeobox' domain profile. 1 44 IPR001356 GO:0003677
Amo09g0060 590 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 1 211 - -
Amo09g0060 590 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 210 588 - -
Amo09g0060 590 Gene3D - 141 318 IPR023393 -
Amo09g0060 590 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Amo09g0060 590 Pfam START domain 210 318 IPR002913 GO:0008289
Amo09g0060 590 ProSiteProfiles START domain profile. 367 452 IPR002913 GO:0008289
Amo09g0060 590 SMART HOX_1 1 48 IPR001356 GO:0003677
Amo09g0060 590 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 211 IPR042160 -
Amo09g0060 590 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 210 588 IPR042160 -
Amo09g0060 590 Coils Coil 100 122 - -
Amo09g0060 590 Coils Coil 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0060 Amo-Chr9 698346 709504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0060 1 589 Homeobox Transcription Factor Family AT1G79840 52.553 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo09g0060 START 1.2e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0060 K09338 - qsu:111988083 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0241 19 2779659 2795811 Amo09g0060 09 698346 709504 hybridization