Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0002 ATGGGTCACTTTTCATGCTTCGTTGTTCTAGCTCTCTCATTTCTCACTCCCTCCTCGGCAGTTCATCAACACTCTAATCTGGTTGTACAAGATATAGACAGAGGCATGAATGGGTCAAGAAGAAACTTGGGTTACTTTTCATGTGGAACTGGTAATCCCATTGACGACTGCTGGCGTTGTGACCCAAACTGGGAAAATAACCGTCAAAAACTCGCAGATTGCGCCATCGGGTTCGGCAAGGACGCAACCGGAGGAAGAAACGGCCAAATCTATGTAGTAACGGACTCTGGAGATGATGATCCTGTGAACCCAAAACCAGGAACACTAAGACACGCAGTTATTCAAGACGAGCCACTATGGATCATTTTCAAGAGAGACATGGTGATTAATCTGAAACAAGAGCTTGTTATGAATTCCTTCAAGACTATTGACGGAAGAGGTGCTAGTGTTCACATTGCCAATGGTGGATGCATCACCATACATCATGTGAGTAACATCATCATTCATGGTATTCACATCCATGATTGTGTGCCAACTGGGCATGGGTACATAAGAGACTCTCCAAGCCATTATGGGTGGTGGACGGTGTCGGACGGAGACGGAGTTTCCATCTTTGGTTCGAAACATGTGTGGGTTGATCATTGCTCGCTGTCTAACTGCCATGATGGTCTCATTGATGCCATCCATGGATCGACGGCTATTACCATATCCAACAATTACATGACGCATCATAACAAGGTGATGCTGCTGGGTCATAGTGACGACTACACTCAAGACAAGGACATGCAAGTCACAATAGCCTATAATCATTTTGGAGAAGGCCTCGTTCAAAGGATGCCAAGGTGCAGACATGGGTATTTTCACGTGGTTAATAATGCCTATACTCACTGGGAAATGTACGCTATTGGCGGGAGTGCTAACCCAACCATTATAAGCCAAGGGAACAGGTTTCTGGCACCGGATAACAGGTTCAGCAAGGAGGTGACGAAGCACGAGATTGCGGCACAGAAGGAATGGAAGAACTGGAACTGGAGATCTGAGGGGGACATGTTCTTGAATGGAGCATTCTTCCGAGAATCTGGTGAAGGTGCTCTTTATACCTATGCTAGGGCATTGAGTCTCAGTGCAAGGCCATCTTCTTTGGTTGAATCAATGACCACCACTGCTGGTGCACTCAACTGTAAGAAGGGTAACCGTTGCTGA 1203 0.463 MGHFSCFVVLALSFLTPSSAVHQHSNLVVQDIDRGMNGSRRNLGYFSCGTGNPIDDCWRCDPNWENNRQKLADCAIGFGKDATGGRNGQIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVINLKQELVMNSFKTIDGRGASVHIANGGCITIHHVSNIIIHGIHIHDCVPTGHGYIRDSPSHYGWWTVSDGDGVSIFGSKHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDDYTQDKDMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNAYTHWEMYAIGGSANPTIISQGNRFLAPDNRFSKEVTKHEIAAQKEWKNWNWRSEGDMFLNGAFFRESGEGALYTYARALSLSARPSSLVESMTTTAGALNCKKGNRC* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Amo09g0002 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Amo09g0002 400 SUPERFAMILY Pectin lyase-like 35 394 IPR011050 -
Amo09g0002 400 SMART amb_all 126 323 IPR002022 -
Amo09g0002 400 Gene3D - 51 393 IPR012334 -
Amo09g0002 400 PANTHER OS04G0137100 PROTEIN 21 397 - -
Amo09g0002 400 PANTHER PECTATE LYASE 18-RELATED 21 397 IPR045032 GO:0030570
Amo09g0002 400 Pfam Pectate lyase 132 317 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0002 Amo-Chr9 19549 23395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0002 4 400 Polysaccharide Lyase AT5G63180 72.818 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0002 K01728 - gmx:100810380 693.73