Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2556 ATGGAAAACATTTGTTCAGAGGTTGAGATGGATTTGCCACCGGGATTCAGGTTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTATACAACAAGGTTATTGACACTAACTTTTCAGCCAGAGCCATTGCTGAGGTGGACTTGAATAGGTCTGAGCCTTGGGATTTGCCATGGAAGGCGAAAATGGGTGAAAAAGAGTGGTACTTTTTCTGTGTAAGGGACAGAAAGTACCCAACAGGATTGAGGACAAACAGAGCAACAGAAGCAGGGTATTGGAAGGCCACTGGAAAAGACAAGGAGATATACAGAGGCAAATCACTTGTTGGCATGAAGAAGACCCTTGTCTTCTACAAAGGTAGGGCTCCCAAAGGTGAGAAATCTGATTGGGTCATGCATGAGTTCAGGCTTCATGGTAAATTCAATCCCCACAACCTCCCCAAATCTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGTCTTCAGCCGCCAAGAAAATCCATCTTACCGGGATAATGAGGTTGGACTCTTCTGTTTTCTTGCCACCATTGGCAGATTCCTCATCATCACCTTCCAACACTGCTACTACAGCACCTTACGTGCCCTGCTTCTCCAATCCAATCATTCACAACCAAGTTGGGATCTTTGATCCATTTAGCAACACCCCTTTTGTTGCTGATTCATTCTACTCTTCTCAAGGGATGCCAATGCAACATGCTCAACCACCAAGTTCCACATATTCCGCTTCCGGCTACACCACTCATGACCATTCAATTCTCAGAGCCTTGCTTCAAAACAATTCTTCAAACCTCAGGAATGGTTTCAAGCCTGGAGAGAGGGAAATGGCCCATCATCAAACTTCTCTTGTTGATGCCAACAACAACAACAACAATGGAATCACTTCTGTTGTTGCCCCACAGGACCTTTCTAGCCTCTGGAATTACCAGGTTCAGATCAAGTAG 969 0.4499 MENICSEVEMDLPPGFRFHPTDEELISHYLYNKVIDTNFSARAIAEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSDWVMHEFRLHGKFNPHNLPKSAKNEWVICRVFQKSSAAKKIHLTGIMRLDSSVFLPPLADSSSSPSNTATTAPYVPCFSNPIIHNQVGIFDPFSNTPFVADSFYSSQGMPMQHAQPPSSTYSASGYTTHDHSILRALLQNNSSNLRNGFKPGEREMAHHQTSLVDANNNNNNGITSVVAPQDLSSLWNYQVQIK* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2556 322 Gene3D NAC domain 21 167 IPR036093 GO:0003677|GO:0006355
Amo08g2556 322 ProSiteProfiles NAC domain profile. 12 162 IPR003441 GO:0003677|GO:0006355
Amo08g2556 322 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 312 - -
Amo08g2556 322 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
Amo08g2556 322 SUPERFAMILY NAC domain 8 162 IPR036093 GO:0003677|GO:0006355
Amo08g2556 322 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2556 Amo-Chr8 39637535 39639035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2556 10 317 NAC Transcription Factor Family AT5G07680 53.846 1.55e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo08g2556 NAM 5.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2556 - - gmx:100798002 406.757