Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2543 CATGAAGCTTCTATYGTGATTGAAAAATTGGAGAATTTTGATAACACCKATGAGATGGAATGTTCATATCAAAAGGCACAAGTCCTAAGAAGCAGAGTTTACAAGAAATTCATCAGGAGTGAATTATGTGATTTCAGTGATGCATGTGATGGAGACTTCACCTTTGCAAGTGCCCTCGAAAATTTTGGGGGAGAACATTCTGATCCTTTATTTGTAACTTTGGGAGGGCCTGTTATGACCAAATTCTCTATGGCTTTGAGAGACATCAGTACATTCAAGGACGCTCTTAGGACACAGGTGGAGCAAATGTTGACTGACCGTCTACTTCACATTTACAATGTTGAAATAATGGATGTCAAGGAAGCTCGAAAGCGTTTTGACAAGGCTTCCATTGCATATGACCAGGCACGGGAGAAGTTTATGTCATTGAGGAAAAGTACTAGGCAGGATATCGTCATTGCAATAGAGGAGGAATTGCACAATGCAAGAAGCTCATTTGAAGAAGCCCGTTTCAATCTGATTAGTGCTCTTCACAATGTCGAGGCCAAAAAAAGATTCGAGTTTTTGGAGGCTGTCACTGGAGTAATGGATGCTCATCTTCAATATTTTCGACAGGGATATGAACTACTACATCAGTTGGAGCCCTTCATTGTTGAGGTTTTGTCATATGTACAAAAAGCAAGGGAAAGTCACAATGAGGAGCAGGTTTCTCTATTTGAAAGAATGATAGAGTACAAGCAACTTGTRCATCAAGAAAGTAAGTTGTCCTTGAAGGGATTTTATGATTCTCCTGGTCGAGACTCTCCATTTTCTAGGATATCAAGTGATGTGTTAGATGCAGTAACAGAATCTGTCAAAACCGGAAAGGTTCAAACCATTCGAGAAGGGTTTCTCTCAAAACGATCCAGCAATTTAAGAGGCGATTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGCAAACCATTGACTCTCTTCCATGGTGCCAACTCGCAGAAGAGTCATCATACCTTTGATAATTCTTCTGGCATTTTGAGTCGGTTGATATCTTCACATATTCATGGAGCCAATGATGAAAAGCCRGTTGCTCGTCATACGGTGAACTTGCTTACATCAACAATCAAGGTTGATGCWGAACAGACAGATTTAAGATTCTGCTTTAGGATTGTTTCTCCTTCAAAGGTTTATACATTGCAGGCAGAAAATGCCCTGGACCAAAGGGATTGGATGGAAAAGATAACCGGAGTAATTGCATCCTTGCTCACTATACACACYCTGGGAAAGCCTCAGCCTGTAATTTCTCMCTCAGAAGGTGGTGACTGGGATTCTGCCAGCCCAACTGATTCAGTACAAAGTTCTTCTGATGAMGAAATGGCAGTAAATTCAGGTTTGGCATGCAAGATCACCCCCAAGTCAAATAGGTCACCTAATGGCTTGCAGAAGCATAAACACAGTATAAAATGTGAAAAGCCAATCGATGTTCTTCGAAGGGTTAATGGGAATGACAAATGTGCTGATTGTGGTAAATCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCTGGTGTTCATCGAAATCTTGGTGTACATATATCCAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGATTCCTCAGTTTTAAGCATGTTTCAATCACTTGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGTTATTGCATTCGAAAACTTCAACAGATGATACTCTTGATGGATCATCAAGGGCACCAGAACCAAATTATTTCATGCAAGAAACCTGCATTGATGATCCCATTTCACTAAAGGAGAGGTTCATCCATGCAAAGGGGGGCCAATACACATGTAGTAGATAA 1896 0.4061 HEASIVIEKLENFDNTXEMECSYQKAQVLRSRVYKKFIRSELCDFSDACDGDFTFASALENFGGEHSDPLFVTLGGPVMTKFSMALRDISTFKDALRTQVEQMLTDRLLHIYNVEIMDVKEARKRFDKASIAYDQAREKFMSLRKSTRQDIVIAIEEELHNARSSFEEARFNLISALHNVEAKKRFEFLEAVTGVMDAHLQYFRQGYELLHQLEPFIVEVLSYVQKARESHNEEQVSLFERMIEYKQLVHQESKLSLKGFYDSPGRDSPFSRISSDVLDAVTESVKTGKVQTIREGFLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPLTLFHGANSQKSHHTFDNSSGILSRLISSHIHGANDEKPVARHTVNLLTSTIKVDAEQTDLRFCFRIVSPSKVYTLQAENALDQRDWMEKITGVIASLLTIHTLGKPQPVISXSEGGDWDSASPTDSVQSSSDXEMAVNSGLACKITPKSNRSPNGLQKHKHSIKCEKPIDVLRRVNGNDKCADCGKSEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFQSLGNLFANSVWEELLHSKTSTDDTLDGSSRAPEPNYFMQETCIDDPISLKERFIHAKGGQYTCSR* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2543 631 SUPERFAMILY BAR/IMD domain-like 46 314 IPR027267 -
Amo08g2543 631 Gene3D - 283 431 IPR011993 -
Amo08g2543 631 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 578 IPR001164 GO:0005096
Amo08g2543 631 SMART arf_gap_3 495 615 IPR001164 GO:0005096
Amo08g2543 631 CDD ArfGap 498 623 - -
Amo08g2543 631 Pfam BAR domain of APPL family 54 235 - -
Amo08g2543 631 ProSiteProfiles BAR domain profile. 1 237 IPR004148 GO:0005515|GO:0005737
Amo08g2543 631 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Amo08g2543 631 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Amo08g2543 631 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Amo08g2543 631 SMART 5bar 1 219 IPR004148 GO:0005515|GO:0005737
Amo08g2543 631 Coils Coil 119 139 - -
Amo08g2543 631 MobiDBLite consensus disorder prediction 446 460 - -
Amo08g2543 631 Gene3D Arfaptin homology (AH) domain/BAR domain 32 251 IPR027267 -
Amo08g2543 631 CDD PH_ACAP 294 428 - -
Amo08g2543 631 ProSiteProfiles PH domain profile. 291 424 IPR001849 -
Amo08g2543 631 Pfam Putative GTPase activating protein for Arf 498 587 IPR001164 GO:0005096
Amo08g2543 631 MobiDBLite consensus disorder prediction 438 460 - -
Amo08g2543 631 CDD BAR_SFC_plant 18 216 IPR035670 -
Amo08g2543 631 SUPERFAMILY PH domain-like 204 423 - -
Amo08g2543 631 Pfam PH domain 293 423 IPR001849 -
Amo08g2543 631 PANTHER CENTAURIN/ARF 18 623 IPR045258 GO:0005096
Amo08g2543 631 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 18 623 - -
Amo08g2543 631 SUPERFAMILY ArfGap/RecO-like zinc finger 495 585 IPR037278 -
Amo08g2543 631 SMART PH_update 292 426 IPR001849 -
Amo08g2543 631 Gene3D Arf GTPase activating protein 477 628 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2543 Amo-Chr8 39486376 39496234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2543 507 606 C2H2 Transcription Factor Family AT4G05330 48.077 5.58e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2543 K12489 - gmx:100797073 790.415