Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2537 ATGCCTTTTGAAGTAATGAACCAGAGGGGCGTTTCGACCTTGTCTCACTTTTACGACGACATCTCCTTTCCTCCAGAGAAGAATCCTGGATTACGGAAGCAAAAATCTATTCACGAGCGATACCCGCAAGGAAAGAGTGAGATCACAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCGTGGAATGAATGCAAAAACAGGCTTGCCGATGTCGCAGACTGGTTTATCTTCCGAAGGCACAGGAAGCACACGATTCGGTGGTAAAGAAGGCATTGCAGATGTGCTGAAGGATTCCAAGGAGTTACTTAACTATCATCCAAGATCATGGACTGATGTGCGTATGCAGCCGACATCTAGCTCGTATGGTTTCATTGGGAACAAGATTGTTGCCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCAAGTTCATTGTCTGATATGTTTACTCAAAAGTTGAGATTAATGGGGAATGATGTTTTCCGGGATCAGTCTGTTTCCGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTCAAGAAATTGAGGCTGACACTATTGGGAATCTTCTTCCTGATGAGGATGACCTGTTTTCTGGTGTTGCTGATGAGTTAGGATCCAATGTTCATGCCAAAGCAAATGATGATTTCGAAGATTTTGATTTGTTTAGCAGTGGGGGAGGCATGGAGTTAGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAGCCAGCGGCTTAGAAGGAGATCTTGGTTATTTCGGAGGTTCCAAAGGAAAAATTCCTCTTGGTGACCAATCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGATGACTCTGAGCTGAAGACTCTCTTCGAGCAATATGGAGATATCCGAACCATGTATACCGCTTGCAAGCCTCGCGGTTTTGTCATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTCCAACATAAGTCGTTGAGATCTCGAAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTGGTCATGGTGGTGTGATGATATCTGGTCTTGATTCATCTGTTTCAAATGAGGAACTTAAGCATATTTTCGCATTATATGGAGAAATTAAAGAAATATATGAATCTCCTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCAGAAGCTTCTCTTGGTGCTTCGAACAGGATCTGCATTCCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCATAGAAATGCTATTCTAATGCAGCAGTCTCAAAAGGGACAAGAAGAACCAGATTTTGTTCATAATCTTAGTGATAACTTATTAAGACAGAACGCAACATCTTCTGGAGCAGCCATATCTGGTGGCAGCTTGGAGAGTGGATATAATCAGGGGTTTCAATCTGCAAAAAGGATACCTCTGAATGGTTTTGTTGATAATGCTTTATATCCTGTGGGTTCTAGCATACCAAAGATGGCAAGAGGGGCTTCTGGTGGAAAAGTATCCGGAGTTTACGAGTCTGCAAATGTTGTTGATGCAATGAAACTGGGATCTATTACAAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATGGTTTAGCTAGTGGTAGTCCCTACAACTTTTCAAACCCCATCAGCAATGTTGCTGCCAGTATTGGAACTGGATCGACAGAATTGTCAGACAGCAGGCATATTCAGGGGATTGGCTCACCTGGCAACCTAGCCGAATTTAATGCAGTAGTTTCAGGAAACGGGAGCCGCCCGCCTCAGGGACTTTATCATATGTGGAACAACTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCATAAAACACCACCATCCTTTATTAATGGTACTGGTGCTCCTGGTGTTCCGCAGATGCCCGGCTTTCCTAGAACACCACCTCATGTGCTGAGATCATCACAGATAGACCATCATGTCGGATCAGCACCGGTCGTTACTGCCTCACCCTGGGAAAGACAGCCTTCTTACTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCGAATGGGATCTTTAGGAAGTACAGGTTTTCATGGTTCTTGGCAGATGCATCCTCCGGACTTGTCTTCTCGCAACATGTTTTCTCATGTGGGTGGGAACAGTACAGAACTGTCATCCAGTGCTGGGCAGGGATCTCCTAAGTTGTCACATTTTTTCCCAGGGAGACTTCCCATGAATTCAATGCTGAAGTTTGATTCGGCCAATGAACGGATGAGAAGCCTCTATCATCGTAGAAGTGAAGCAAATACTAACAGTGCTGATAAAAAGCAATATGAGCTTGATCTAGGCCGCATATTGCGCGGGGAAGATAACCGAACCACACTTATGATAAAAAATATTCCAAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATYAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTCATCAACATGATTGACCCTGGTCAAATTATTCAGTTCCATCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGTCGCCCCATTCTCTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGAAACAATATTCGAACAAGGCCAGGAAAATCTCGTACGAGTGCTAACGATGAGAATCGCAACCAAGGGAGTTCTTCAGCTGCAGCCGGCGGGGATGAATCTGCTAATGGAGTAGAGTCATCCTTGAGTTCATCGAAAACCTGA 2916 0.4335 MPFEVMNQRGVSTLSHFYDDISFPPEKNPGLRKQKSIHERYPQGKSEITASPGSILNASSPRGMNAKTGLPMSQTGLSSEGTGSTRFGGKEGIADVLKDSKELLNYHPRSWTDVRMQPTSSSYGFIGNKIVANAASRESSLFSSSLSDMFTQKLRLMGNDVFRDQSVSVGSLPEEEPYKSLQEIEADTIGNLLPDEDDLFSGVADELGSNVHAKANDDFEDFDLFSSGGGMELEGDEHLVSGKRASGLEGDLGYFGGSKGKIPLGDQSSRTLFVRNINSNVDDSELKTLFEQYGDIRTMYTACKPRGFVMISYYDIRAAQNAMKALQHKSLRSRKLDIHYSIPKGNAPEKDIGHGGVMISGLDSSVSNEELKHIFALYGEIKEIYESPEVNHVKFIEFYDVRAAEASLGASNRICIPGKQIKLEPGHHRNAILMQQSQKGQEEPDFVHNLSDNLLRQNATSSGAAISGGSLESGYNQGFQSAKRIPLNGFVDNALYPVGSSIPKMARGASGGKVSGVYESANVVDAMKLGSITRFHPHSLPEFHDGLASGSPYNFSNPISNVAASIGTGSTELSDSRHIQGIGSPGNLAEFNAVVSGNGSRPPQGLYHMWNNSNLHQQPPSNAMLWHKTPPSFINGTGAPGVPQMPGFPRTPPHVLRSSQIDHHVGSAPVVTASPWERQPSYLGESPEASSFRMGSLGSTGFHGSWQMHPPDLSSRNMFSHVGGNSTELSSSAGQGSPKLSHFFPGRLPMNSMLKFDSANERMRSLYHRRSEANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDXQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIQFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRTSANDENRNQGSSSAAAGGDESANGVESSLSSSKT* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2537 971 MobiDBLite consensus disorder prediction 620 656 - -
Amo08g2537 971 MobiDBLite consensus disorder prediction 930 971 - -
Amo08g2537 971 MobiDBLite consensus disorder prediction 908 971 - -
Amo08g2537 971 SUPERFAMILY RNA-binding domain, RBD 799 884 IPR035979 GO:0003676
Amo08g2537 971 SMART rrm1_1 356 424 IPR000504 GO:0003723
Amo08g2537 971 SMART rrm1_1 271 339 IPR000504 GO:0003723
Amo08g2537 971 SMART rrm1_1 799 877 IPR000504 GO:0003723
Amo08g2537 971 MobiDBLite consensus disorder prediction 18 90 - -
Amo08g2537 971 CDD RRM3_MEI2_like 800 885 IPR034454 -
Amo08g2537 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Amo08g2537 971 CDD RRM1_MEI2_like 269 344 IPR034453 -
Amo08g2537 971 MobiDBLite consensus disorder prediction 47 85 - -
Amo08g2537 971 Gene3D - 243 351 IPR012677 -
Amo08g2537 971 Gene3D - 355 448 IPR012677 -
Amo08g2537 971 MobiDBLite consensus disorder prediction 714 738 - -
Amo08g2537 971 SUPERFAMILY RNA-binding domain, RBD 267 426 IPR035979 GO:0003676
Amo08g2537 971 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 970 - -
Amo08g2537 971 MobiDBLite consensus disorder prediction 714 742 - -
Amo08g2537 971 Pfam RNA recognition motif 2 797 893 IPR007201 -
Amo08g2537 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 970 - -
Amo08g2537 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Amo08g2537 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Amo08g2537 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2537 Amo-Chr8 39382483 39390488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2537 267 454 Eukaryotic Initiation Factors Gene Family AT1G49760 23.000 3.97e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2537 - - aip:107612925 1655.57