Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo08g2537 | ATGCCTTTTGAAGTAATGAACCAGAGGGGCGTTTCGACCTTGTCTCACTTTTACGACGACATCTCCTTTCCTCCAGAGAAGAATCCTGGATTACGGAAGCAAAAATCTATTCACGAGCGATACCCGCAAGGAAAGAGTGAGATCACAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCGTGGAATGAATGCAAAAACAGGCTTGCCGATGTCGCAGACTGGTTTATCTTCCGAAGGCACAGGAAGCACACGATTCGGTGGTAAAGAAGGCATTGCAGATGTGCTGAAGGATTCCAAGGAGTTACTTAACTATCATCCAAGATCATGGACTGATGTGCGTATGCAGCCGACATCTAGCTCGTATGGTTTCATTGGGAACAAGATTGTTGCCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCAAGTTCATTGTCTGATATGTTTACTCAAAAGTTGAGATTAATGGGGAATGATGTTTTCCGGGATCAGTCTGTTTCCGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTCAAGAAATTGAGGCTGACACTATTGGGAATCTTCTTCCTGATGAGGATGACCTGTTTTCTGGTGTTGCTGATGAGTTAGGATCCAATGTTCATGCCAAAGCAAATGATGATTTCGAAGATTTTGATTTGTTTAGCAGTGGGGGAGGCATGGAGTTAGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAGCCAGCGGCTTAGAAGGAGATCTTGGTTATTTCGGAGGTTCCAAAGGAAAAATTCCTCTTGGTGACCAATCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGATGACTCTGAGCTGAAGACTCTCTTCGAGCAATATGGAGATATCCGAACCATGTATACCGCTTGCAAGCCTCGCGGTTTTGTCATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTCCAACATAAGTCGTTGAGATCTCGAAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTGGTCATGGTGGTGTGATGATATCTGGTCTTGATTCATCTGTTTCAAATGAGGAACTTAAGCATATTTTCGCATTATATGGAGAAATTAAAGAAATATATGAATCTCCTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCAGAAGCTTCTCTTGGTGCTTCGAACAGGATCTGCATTCCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCATAGAAATGCTATTCTAATGCAGCAGTCTCAAAAGGGACAAGAAGAACCAGATTTTGTTCATAATCTTAGTGATAACTTATTAAGACAGAACGCAACATCTTCTGGAGCAGCCATATCTGGTGGCAGCTTGGAGAGTGGATATAATCAGGGGTTTCAATCTGCAAAAAGGATACCTCTGAATGGTTTTGTTGATAATGCTTTATATCCTGTGGGTTCTAGCATACCAAAGATGGCAAGAGGGGCTTCTGGTGGAAAAGTATCCGGAGTTTACGAGTCTGCAAATGTTGTTGATGCAATGAAACTGGGATCTATTACAAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATGGTTTAGCTAGTGGTAGTCCCTACAACTTTTCAAACCCCATCAGCAATGTTGCTGCCAGTATTGGAACTGGATCGACAGAATTGTCAGACAGCAGGCATATTCAGGGGATTGGCTCACCTGGCAACCTAGCCGAATTTAATGCAGTAGTTTCAGGAAACGGGAGCCGCCCGCCTCAGGGACTTTATCATATGTGGAACAACTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCATAAAACACCACCATCCTTTATTAATGGTACTGGTGCTCCTGGTGTTCCGCAGATGCCCGGCTTTCCTAGAACACCACCTCATGTGCTGAGATCATCACAGATAGACCATCATGTCGGATCAGCACCGGTCGTTACTGCCTCACCCTGGGAAAGACAGCCTTCTTACTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCGAATGGGATCTTTAGGAAGTACAGGTTTTCATGGTTCTTGGCAGATGCATCCTCCGGACTTGTCTTCTCGCAACATGTTTTCTCATGTGGGTGGGAACAGTACAGAACTGTCATCCAGTGCTGGGCAGGGATCTCCTAAGTTGTCACATTTTTTCCCAGGGAGACTTCCCATGAATTCAATGCTGAAGTTTGATTCGGCCAATGAACGGATGAGAAGCCTCTATCATCGTAGAAGTGAAGCAAATACTAACAGTGCTGATAAAAAGCAATATGAGCTTGATCTAGGCCGCATATTGCGCGGGGAAGATAACCGAACCACACTTATGATAAAAAATATTCCAAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATYAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTCATCAACATGATTGACCCTGGTCAAATTATTCAGTTCCATCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGTCGCCCCATTCTCTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGAAACAATATTCGAACAAGGCCAGGAAAATCTCGTACGAGTGCTAACGATGAGAATCGCAACCAAGGGAGTTCTTCAGCTGCAGCCGGCGGGGATGAATCTGCTAATGGAGTAGAGTCATCCTTGAGTTCATCGAAAACCTGA | 2916 | 0.4335 | MPFEVMNQRGVSTLSHFYDDISFPPEKNPGLRKQKSIHERYPQGKSEITASPGSILNASSPRGMNAKTGLPMSQTGLSSEGTGSTRFGGKEGIADVLKDSKELLNYHPRSWTDVRMQPTSSSYGFIGNKIVANAASRESSLFSSSLSDMFTQKLRLMGNDVFRDQSVSVGSLPEEEPYKSLQEIEADTIGNLLPDEDDLFSGVADELGSNVHAKANDDFEDFDLFSSGGGMELEGDEHLVSGKRASGLEGDLGYFGGSKGKIPLGDQSSRTLFVRNINSNVDDSELKTLFEQYGDIRTMYTACKPRGFVMISYYDIRAAQNAMKALQHKSLRSRKLDIHYSIPKGNAPEKDIGHGGVMISGLDSSVSNEELKHIFALYGEIKEIYESPEVNHVKFIEFYDVRAAEASLGASNRICIPGKQIKLEPGHHRNAILMQQSQKGQEEPDFVHNLSDNLLRQNATSSGAAISGGSLESGYNQGFQSAKRIPLNGFVDNALYPVGSSIPKMARGASGGKVSGVYESANVVDAMKLGSITRFHPHSLPEFHDGLASGSPYNFSNPISNVAASIGTGSTELSDSRHIQGIGSPGNLAEFNAVVSGNGSRPPQGLYHMWNNSNLHQQPPSNAMLWHKTPPSFINGTGAPGVPQMPGFPRTPPHVLRSSQIDHHVGSAPVVTASPWERQPSYLGESPEASSFRMGSLGSTGFHGSWQMHPPDLSSRNMFSHVGGNSTELSSSAGQGSPKLSHFFPGRLPMNSMLKFDSANERMRSLYHRRSEANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDXQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIQFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRTSANDENRNQGSSSAAAGGDESANGVESSLSSSKT* | 972 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo08g2537 | 971 | MobiDBLite | consensus disorder prediction | 620 | 656 | - | - | |
Amo08g2537 | 971 | MobiDBLite | consensus disorder prediction | 930 | 971 | - | - | |
Amo08g2537 | 971 | MobiDBLite | consensus disorder prediction | 908 | 971 | - | - | |
Amo08g2537 | 971 | SUPERFAMILY | RNA-binding domain, RBD | 799 | 884 | IPR035979 | GO:0003676 | |
Amo08g2537 | 971 | SMART | rrm1_1 | 356 | 424 | IPR000504 | GO:0003723 | |
Amo08g2537 | 971 | SMART | rrm1_1 | 271 | 339 | IPR000504 | GO:0003723 | |
Amo08g2537 | 971 | SMART | rrm1_1 | 799 | 877 | IPR000504 | GO:0003723 | |
Amo08g2537 | 971 | MobiDBLite | consensus disorder prediction | 18 | 90 | - | - | |
Amo08g2537 | 971 | CDD | RRM3_MEI2_like | 800 | 885 | IPR034454 | - | |
Amo08g2537 | 971 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 270 | 343 | IPR000504 | GO:0003723 | |
Amo08g2537 | 971 | CDD | RRM1_MEI2_like | 269 | 344 | IPR034453 | - | |
Amo08g2537 | 971 | MobiDBLite | consensus disorder prediction | 47 | 85 | - | - | |
Amo08g2537 | 971 | Gene3D | - | 243 | 351 | IPR012677 | - | |
Amo08g2537 | 971 | Gene3D | - | 355 | 448 | IPR012677 | - | |
Amo08g2537 | 971 | MobiDBLite | consensus disorder prediction | 714 | 738 | - | - | |
Amo08g2537 | 971 | SUPERFAMILY | RNA-binding domain, RBD | 267 | 426 | IPR035979 | GO:0003676 | |
Amo08g2537 | 971 | PANTHER | RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 2 | 970 | - | - | |
Amo08g2537 | 971 | MobiDBLite | consensus disorder prediction | 714 | 742 | - | - | |
Amo08g2537 | 971 | Pfam | RNA recognition motif 2 | 797 | 893 | IPR007201 | - | |
Amo08g2537 | 971 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 2 | 970 | - | - | |
Amo08g2537 | 971 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 357 | 422 | IPR000504 | GO:0003723 | |
Amo08g2537 | 971 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 272 | 336 | IPR000504 | GO:0003723 | |
Amo08g2537 | 971 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 355 | 428 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo08g2537 | Amo-Chr8 | 39382483 | 39390488 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo08g2537 | 267 | 454 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 23.000 | 3.97e-08 | 55.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo08g2537 | - | - | aip:107612925 | 1655.57 |