Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2532 ATAGATAATAAATTGATTATTAAGGTGGATCCATCAAGGCATGGAAAGAGGTCAGTTTCATTGGAAGAAGCACAAAAGGAGGAAGAAGAACATCATGAACACTTGTTCCCAATCTATTCTGAAAGATCTCAACAAGACATGTCGGCTATGGTTTCTGTCCTCACACAAGTCATGGGAGGAGGCATCCCAAATGACCCTTTAACCCCTTCTCATCAATCTACTAATCACAATAATCAACAATCTCAACCACCATCACAAGATCAAGGGAACATAAGAAGAAGACATTATAGAGGGGTGAGACAACGGCCATGGGGAAAATGGGCGGCGGAGATTCGAGATCCACAAAAGGCAGCTAGGGTATGGCTTGGAACTTTTGAAACTGCTGAGGCGGCTGCGCTCGCATACGACGAGGCAGCCCTTAGATTCAAAGGAAGCAAAGCTAAACTTAATTTTTCTGAAAGAGTTCAAGGAACTGTCGAATTTGGTAATTACCTCACGAATTTTCAACAAAATAATAGTCAACATCAAATTCAACATCAGAATACAGCAACTCAACAAAATGTTCAATATCCATCACAAGGGATAATGACAAATAGTGGCGGATTCGGTTATGATCAACAGAACATGTATTTTATTCCGTCTCATCATCAACACTATTCATCATCATCTTCTTCTTCGTCTTCCGAACTACCACATCAACATTATAACCAACAACAAGAACTTATGAGATCATATTCATTGCAATATGGAGGTTCTTCTTCTTCTAGTGATCATCATTATCATCATCAGCAATATCCTACTAAGAATTGGAATGATGATGACATGGATGGTAGACAATAA 840 0.3917 IDNKLIIKVDPSRHGKRSVSLEEAQKEEEEHHEHLFPIYSERSQQDMSAMVSVLTQVMGGGIPNDPLTPSHQSTNHNNQQSQPPSQDQGNIRRRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFSERVQGTVEFGNYLTNFQQNNSQHQIQHQNTATQQNVQYPSQGIMTNSGGFGYDQQNMYFIPSHHQHYSSSSSSSSSELPHQHYNQQQELMRSYSLQYGGSSSSSDHHYHHQQYPTKNWNDDDMDGRQ* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2532 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 259 - -
Amo08g2532 279 PANTHER DNA-BINDING DOMAIN 28 259 IPR044808 GO:0003700|GO:0009873
Amo08g2532 279 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Amo08g2532 279 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Amo08g2532 279 MobiDBLite consensus disorder prediction 261 279 - -
Amo08g2532 279 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Amo08g2532 279 MobiDBLite consensus disorder prediction 66 89 - -
Amo08g2532 279 MobiDBLite consensus disorder prediction 216 260 - -
Amo08g2532 279 MobiDBLite consensus disorder prediction 58 91 - -
Amo08g2532 279 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700|GO:0006355
Amo08g2532 279 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Amo08g2532 279 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Amo08g2532 279 MobiDBLite consensus disorder prediction 216 279 - -
Amo08g2532 279 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Amo08g2532 279 MobiDBLite consensus disorder prediction 1 34 - -
Amo08g2532 279 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2532 Amo-Chr8 39316850 39318999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2532 34 156 AP2-EREBP Transcription Factor Family AT5G61890 68.702 1.81e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo08g2532 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2532 - - adu:107463444 453.751