Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2531 ATGGACCCTGCTGACGCATTCACAACAAGCCTCTTCAAGTGGGATCCACGCACGGTCCTTCCTCCTCCTCCTTCCTCTGCCACTCGTCCGCCGCCTCAGATCCTTGACTACACGGTTGCTCCCCCTGCTGTCTCCCCTTCTTCGGTGTCCTTCCCGCCACCCAAGAGACCCGACCTAGGAGGTCTCGAAGAGCTTTTCCAAGCCTACGGTATACGCTATTACACGGCGGCAAAGATGGCAGAGCTAGGGTTCACGGTGAGGACTCTTGTTGACATGAAAGACGATGAGATCGACGATATGATGAATAGCCTCTCTCAGATCTTCCGATGGGACCTTCTCGTCGGTGAGAGGTATGGTGTTAAGGCTGCCGTTAGAGCTGAGCGGCGTCGTCTCGAGGAGGAGGAGCTTATCAAACGCCGTAACTTCCTCTGCACCACTGATACCACCACCAACGCCCTTGACGCTCTTTCTCAAGAAGGTTTATCAGAGGAACCAGTGGTGCAACAAGAGAAAGAGGCTGCTGGAAGCGGGGGAGGGAGTACGTGGGAGGTGGTAGGCGGCGGAGAAGAGAGGAGGAAGCAGGTGCAGCAAGAAAGGAGGAGGAGAAGAAGCAACAAGATAAATAACAAGGGAATTAATAGAAGCAACAACGAGGATGGTGAAGAGGAAGAGTTAGAAGGAGAAGAGAACGACATGATTGAAGGGAGCAATGGCGGCAACGGCGGAGAAAGGCAAAGAGAGCACCCCTTCATAGTGACGGAGCCTGGGGAAGTGGCACGTGGCAAGAAGAATGGATTAGACTACCTTTTTCATCTCTATGAACAATGCCGTGAGTTCTTGATCCAAGTTCAAGCCATTGCTAAGGACCGTGGGGAAAAATGCCCCACCAAGGTAACAAATCAAGTATTCAGGTATGCAAAGAAAGCAGGTGCAAGCTACATTAACAAGCCAAAGATGAGGCACTACGTCCATTGCTATGCCCTACACTGCCTCGACGAGGACGCGTCTAACGAGCTCCGACGAACCTTCAAGGAGAGGGGCGAGAACGTGGGCGCCTGGAGGCAAGCGTGCTACAAGCCTCTAGTTGCGATAGCTGCTCGTCAGGGTTGGGACATTGATGCCATCTTCAATGCTCATCCTCGCCTTTCCATTTGGTATGTCCCTACTAAGCTCCGCCAACTTTGTCATGCTGAGAGTAACAATGCTGCTGTGGTCGCCACCGTAGCAGTCTCTACCTCTGTTTCGCCAGCAGTTGCCCAACTTCCTTTTTAA 1272 0.5259 MDPADAFTTSLFKWDPRTVLPPPPSSATRPPPQILDYTVAPPAVSPSSVSFPPPKRPDLGGLEELFQAYGIRYYTAAKMAELGFTVRTLVDMKDDEIDDMMNSLSQIFRWDLLVGERYGVKAAVRAERRRLEEEELIKRRNFLCTTDTTTNALDALSQEGLSEEPVVQQEKEAAGSGGGSTWEVVGGGEERRKQVQQERRRRRSNKINNKGINRSNNEDGEEEELEGEENDMIEGSNGGNGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNELRRTFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAESNNAAVVATVAVSTSVSPAVAQLPF* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2531 423 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 237 402 IPR035209 GO:0003677
Amo08g2531 423 MobiDBLite consensus disorder prediction 158 246 - -
Amo08g2531 423 Gene3D Protein LEAFY 240 409 IPR038276 -
Amo08g2531 423 PANTHER PROTEIN LEAFY 1 410 IPR002910 GO:0003677|GO:0006355
Amo08g2531 423 MobiDBLite consensus disorder prediction 1 55 - -
Amo08g2531 423 Pfam Floricaula / Leafy protein SAM domain 58 135 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2531 Amo-Chr8 39286574 39290036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2531 1 401 Orphan Transcription Factor Family AT5G61850 60.911 4.84e-155 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Amo08g2531 C_LFY_FLO 8.4e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2531 - - gmx:100798196 548.125