Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2518 ATGAAGCCACCATCTTCATTATTCCTCTCTCGTCCTTCTAGAACTTTCTTCCCTACCTTCCCTTTCAAATTCAAGTACCTCGCCCTCCGAAACGCACCGTTTCGCGCCCTTTCCACTCGCTCCGACTCCACGCGCCGCAAAGAAAGGCCTCGCCTTTCTTCTCCCTCCGCCACCCCAAAGAGCTTAATTGACGACGAGGCTGAGCTCAGTGACTGGGTCGACGAGATTAGAACCGCGCGAGTTGACTCGGACTTTGGTGAGTCAACTCGGAATCGTAGGCAAGTTCGCCGTGACACTAATTCGAACTCGTCGTTCTCGCGGAATTCGGGGTTTTCGCAGCGCAGATTCGGTCGCGAATTGGAGAAGGAAGACAATGGCGGATTCAGGACAAGGAAGAGAAGGGGTGTGGAATTGAACAGAGGAAGTGGAGGGAAGAGTTTGAGCAGAAAACCTAAACCCCAATTGATGAGCGATGATGAAGATGATGAAGTGGTTGTGAGAAAGGGATTCAAGGGTTTTCTGAGTGAGGAAGAGGAAGAAGAAGAAGAAGAAAGTGGTGAGAGTGAGGATGATGAGATTGTGAGAAAGAGTAGAACTGCTTTGTTTGGTGGCACTAAACAACAACAACAACCGGCACCAGCAGCTCCAAGAGCTTCTTCACCTTCTGGAACTGATTCTTATTTGAGTGACACCAGGTTCGATCAATGTTCAATCTCCCCACTATCATTGAAAGGAGTCAAGGATGCTGGATATGAGAAGATGACTATTGTTCAGGCGGCAACTCTTCCTGTAATACTCAAAGGTAAGGATGTCCTTGCCAAGGCTAGAACAGGCACTGGGAAAACAGTTGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAATTCACCGCCAACTGAACGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTACAGAAGCTGCTAAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGAGGGACGAGACTTGCCTTAGAACAGAAACGTATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTGGAGAATACTGCTGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTGTTGGTGCTTGATGAAGCTGATCATTTACTGGACATGGGATTTCGGAAAGACATTGAGAAGATAATTGCAGCAGTACCTAAACAACGACAAACACTCATGTTTTCTGCCACTATTCCGGATGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAGTTTATCAATACGGTTCAAGAGGGAACTGAGGAGACGCACTCACAGGTTCGCCAAGCACATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTACTCTATGCTCTTCTAAAGGAGCACATTGCGGATGATGTTGACTATAAGGTTCTTGTGTTCTGCACAACTGCCATGGTGACAAGACTTGTTGCTGAACTTCTTGGCGAGTTGAACCTGAATGTCAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAAGAATTTCGCAAGTCAAAGGGACTTATCTTGGTTACATCCGATGTGTCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCCACTGACAGAGAACAGTATATACATAGACTTGGTAGAACGGGACGTCGAGGGAAGGAAGGGCAGGGCATATTGCTTTTGGCTCCATGGGAAGAGTTCTTCTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCCATTCCTTCTGTTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCTCTATGCCATGTTGAGATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCGAACAAGAAGATCGGGCGCGACAAGTATAGGCTCGTAGAGCTTGCAAATGAGTTCAGCAAATGCATGATGCTTGATAACCCTCCTGCTATCCCTAAGCTTGTTCTTGGCAAGATGGGACTTAGAAATATCCCTGGTTTGCGTTCCAAATAG 2100 0.4614 MKPPSSLFLSRPSRTFFPTFPFKFKYLALRNAPFRALSTRSDSTRRKERPRLSSPSATPKSLIDDEAELSDWVDEIRTARVDSDFGESTRNRRQVRRDTNSNSSFSRNSGFSQRRFGRELEKEDNGGFRTRKRRGVELNRGSGGKSLSRKPKPQLMSDDEDDEVVVRKGFKGFLSEEEEEEEEESGESEDDEIVRKSRTALFGGTKQQQQPAPAAPRASSPSGTDSYLSDTRFDQCSISPLSLKGVKDAGYEKMTIVQAATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVANSPPTERDHRRPPIHVLVICPTRELASQAATEAAKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQAHLVAPLDKHFSLLYALLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPTDREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPIPSVDPDTKKKVERALCHVEMKNKEAAYQAWLGYYNSNKKIGRDKYRLVELANEFSKCMMLDNPPAIPKLVLGKMGLRNIPGLRSK* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2518 699 PANTHER RNA HELICASE 26 98 - -
Amo08g2518 699 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 262 445 IPR014001 -
Amo08g2518 699 MobiDBLite consensus disorder prediction 83 231 - -
Amo08g2518 699 MobiDBLite consensus disorder prediction 98 113 - -
Amo08g2518 699 Pfam Helicase conserved C-terminal domain 475 584 IPR001650 -
Amo08g2518 699 Gene3D - 454 677 IPR027417 -
Amo08g2518 699 CDD DEADc_MSS116 238 447 - -
Amo08g2518 699 SMART ultradead3 250 463 IPR014001 -
Amo08g2518 699 Gene3D - 176 446 IPR027417 -
Amo08g2518 699 MobiDBLite consensus disorder prediction 114 139 - -
Amo08g2518 699 PANTHER RNA HELICASE 197 697 - -
Amo08g2518 699 MobiDBLite consensus disorder prediction 201 231 - -
Amo08g2518 699 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 231 259 IPR014014 GO:0003724
Amo08g2518 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 600 IPR027417 -
Amo08g2518 699 MobiDBLite consensus disorder prediction 83 97 - -
Amo08g2518 699 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 479 626 IPR001650 -
Amo08g2518 699 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 26 98 - -
Amo08g2518 699 CDD SF2_C_DEAD 460 593 - -
Amo08g2518 699 SMART helicmild6 503 584 IPR001650 -
Amo08g2518 699 MobiDBLite consensus disorder prediction 37 65 - -
Amo08g2518 699 MobiDBLite consensus disorder prediction 152 175 - -
Amo08g2518 699 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 197 697 - -
Amo08g2518 699 Pfam DEAD/DEAH box helicase 257 433 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2518 Amo-Chr8 39140763 39145473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2518 224 614 Eukaryotic Initiation Factors Gene Family AT3G19760 29.167 3.63e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2518 - - adu:107463398 1301.96