Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2503 ATGGGTCGGCATTCTTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTCTTCAACTACATTTCTAGGTTTGGTGTTGGTTGCTGGAGTTCAGTTCCCAAACAAGCTGGGCTACAAAGATGTGGAAAGAGTTGRAGARTAAGATGGATAAATTATTTGAGGCCTGATTTGAAGAGAGGCATGTTTTCTCAACAAGAGGAGGATCTTATAATCACTCTCCATGAGGTTCTTGGAAATAGGTGGGCACAGATTGCGGCACAGTTGCCAGGAAGAACAGATAATGAGATAAAGAATTTCTGGAATTCATGTCTGAAGAAGAAGCTAATGAAGCAAGGGATTGATCCAACTACACACAAGCCTCTTCATAATCATGAAGACAAAGATAATGATACTATTATTAATAATAATAATAATAATACAACACAAGCAGCATGTTCTTCTTCTTCTTCCATGGCAATGTTAGATGGAATTATTGGAGGAGTTTCATCATCATTATCATCATCATCATTATTATTAGACCCTTTGACATGCTTGGATTTTTCTCATCATCATGAAAACTATGGATTATTATTCTCTTCAATGCCAAGCCTAGACATGAATAATAATAATAATAATAATGCATTGCTCTCATCAACATCATCATGGGATTGTTGTAGTAATGAAGAGGAGAATAACAAGTTAGAATCTTTGTTTCAGTTTCATCATCAACTCAAATCTGAGGAGGAATTCAATACAAATTATAATAATAATGTGCAGCAGAATTCAATGCAAGAAGATTTCATWAGCAGCTATAATAATTTAAGGTCACTCTCATCAGAAGATCTATCAGCAGCAGCAGCAGGACCAAATTTTGATGTATTCCACCAGATATGA 897 0.3534 MGRHSCCLKQKLRKGLWSPEEDEKLFNYISRFGVGCWSSVPKQAGLQRCGKSXRXRWINYLRPDLKRGMFSQQEEDLIITLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLHNHEDKDNDTIINNNNNNTTQAACSSSSSMAMLDGIIGGVSSSLSSSSLLLDPLTCLDFSHHHENYGLLFSSMPSLDMNNNNNNNALLSSTSSWDCCSNEEENNKLESLFQFHHQLKSEEEFNTNYNNNVQQNSMQEDFISSYNNLRSLSSEDLSAAAAGPNFDVFHQI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2503 298 PANTHER MYB DOMAIN PROTEIN 55 1 156 - -
Amo08g2503 298 MobiDBLite consensus disorder prediction 122 139 - -
Amo08g2503 298 PANTHER MYB-RELATED PROTEIN HV33-LIKE 1 156 - -
Amo08g2503 298 CDD SANT 70 109 IPR001005 -
Amo08g2503 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo08g2503 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo08g2503 298 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo08g2503 298 CDD SANT 17 61 IPR001005 -
Amo08g2503 298 SMART sant 66 114 IPR001005 -
Amo08g2503 298 SMART sant 13 63 IPR001005 -
Amo08g2503 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo08g2503 298 Gene3D - 68 146 - -
Amo08g2503 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo08g2503 298 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Amo08g2503 298 MobiDBLite consensus disorder prediction 122 148 - -
Amo08g2503 298 Gene3D - 11 67 - -
Amo08g2503 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2503 Amo-Chr8 38950028 38951872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2503 1 138 MYB Transcription Factor Family AT4G01680 79.710 6.58e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g2503 Myb_DNA-binding 5.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2503 K09422 - tcc:18603988 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1865 11 94337033 94338282 Amo08g2503 08 38950028 38951872 PCT
Amo08g2503 08 38950028 38951872 Amo11g1865 11 94337033 94338282 PCT