Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2472 ATGGCTTCTTCTACTTCTTTTGCTTCTCTCTTACTCCCTCTTTACAACCCCGCTTTCCGACCAAAACCAACAACTTCTCTTCCCGCTTTTCGCTCCATTCACTCTTCTGTGCTCCCAGCTACTGATGGATCTCAAGCACCCCACAAGAGAACAAGAAGAATGGAAGGTCCTCGGAAAAGCATGGAAGATTCAGTTCAGCGCAAAATGGAGCAGTTTTATGAAGGGAAAGATGGGCCACCTCTCCGTGTTCTTCCGATTGGTGGGCTGGGTGAAATTGGGATGAACTGCATGCTGGTTGGGAACCATGATCGCTATATCCTCATTGATGCCGGAGTTATGTTTCCAGACTATGATGAACTTGGAGTCCAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTGTTATAACACATGGTCATGAGGATCACATTGGAGCGTTGCCTTGGGTCATTCCAGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTCTGAAGGAGCATGGTATTTTTCTTCCATCTAGACTCAAGATATTTAGAACAAGAAAGAAGTTTATGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGATTGGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATCGACGAGACACCTCTGGACGGGAAAGTTTTTGATCGCGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACACTGATGATGAGTGATTCAACCAATGTACTCTCACCTGGAAGGACAATAAGTGAATCTGTTGTTAAAGATGCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACCACCCAATTTGCATCAAATCTGCATCGACTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCCGAAAGTTGGTATTCGTTGGCATGTCTTTGAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCCTCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGATCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCATATGGAAGTAGTCATGCTTTCAAACTAACTAAGGAAGATATTGTTTTGTATTCGGCCAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTGAACCGCATATCAGAGATTGGATCAACAATAATAATGGGTAAAAATGAAGGTCTCCACACATCTGGTCATGCTTATCGTGGGGAATTGGAGGAAGTACTTCGAATTGTGAAGCCGCAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAAATGGCATTCGGCACACTGCTGTTATTAAAAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGGAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAGAGAGAATTTACAGTTGAAGTACAGTGATGGTGACAAAGCATTTGGTACATCAAGCGACCTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATCGTGGTTAGCATGGAAGTTTTTCGCCCCCAAAGAGCAGACAGTTTGGCTGAAAACACCTTAAAAGGGAAGATAAGGATTACGACAAGATGCCTATGGCTTGACAAGGGAAAGTTATTGGATGCACTGCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAAGTGTCCACTGGCTCACATGGAAAGAACAGTGGCCGAGGTCTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCTATTGCCATAGAAAATCCAGCTGCTGTTCTTGCTGAGGAGATAAACACAAAGTTATCTGGCAAATCACATGTGGATCATGGAACATCAACATTAAGAAAAATAGTCGATGGGCACGGGAAGGAAAATCAGCCAGACACAACGCAAATAAGAGTTAATGCAGACGATGTCAATGATGTTGAAGGACTTCTACCTGAGGAAGACACTGGTCCACCAACCGAAGAAGCCGAGGGTGATTTATCGGATTCAGAGGAATTTTGGAAGCCATTTATTGCATCCTCACCAGTTGAGAAGTCAATCAAAGCTAACAACGGTTATGTTCCACGAAAGGAGCACAAGTCTAATATTAAGAAAGATGATTCCGAAGACATTGGTGAAGCCAACTTTGTGAAAGCATCCAGTTCTGAACTCAAGTCGTCGAAGTCAGGGAAGAGGAATAAATGGAAACCTGAAGAAATTAAGAAGTTGATTAACATGCGCGGGAAACTACACGGTAGATTTCAAATTGTGAAGGGAAGGATGGCTTTATGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGTAAATCGCTTTGGACATCTTTGGTACAGAAATATCAGGAGACCAAGAACGAGAAGGGTAGTAGCAAGAGCAGTTGGCAATATCTTGAGGACATGGAAAAGATAATGCCTGATAGTAAAGCAATGGCAACAAAATGA 2625 0.4248 MASSTSFASLLLPLYNPAFRPKPTTSLPAFRSIHSSVLPATDGSQAPHKRTRRMEGPRKSMEDSVQRKMEQFYEGKDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFLPSRLKIFRTRKKFMAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVKDALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIVLYSAKVIPGNESRVMKMLNRISEIGSTIIMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSNGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGRENLQLKYSDGDKAFGTSSDLFIDERLKIALDGIIVVSMEVFRPQRADSLAENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKCPLAHMERTVAEVLRKMVRKYSGKRPEVIAIAIENPAAVLAEEINTKLSGKSHVDHGTSTLRKIVDGHGKENQPDTTQIRVNADDVNDVEGLLPEEDTGPPTEEAEGDLSDSEEFWKPFIASSPVEKSIKANNGYVPRKEHKSNIKKDDSEDIGEANFVKASSSELKSSKSGKRNKWKPEEIKKLINMRGKLHGRFQIVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYQETKNEKGSSKSSWQYLEDMEKIMPDSKAMATK* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2472 874 SUPERFAMILY Metallo-hydrolase/oxidoreductase 81 495 IPR036866 -
Amo08g2472 874 CDD GT1 780 845 - -
Amo08g2472 874 MobiDBLite consensus disorder prediction 669 716 - -
Amo08g2472 874 MobiDBLite consensus disorder prediction 738 755 - -
Amo08g2472 874 Gene3D - 85 497 IPR036866 -
Amo08g2472 874 MobiDBLite consensus disorder prediction 46 64 - -
Amo08g2472 874 PANTHER RIBONUCLEASE J 11 874 - -
Amo08g2472 874 MobiDBLite consensus disorder prediction 736 755 - -
Amo08g2472 874 Pfam Myb/SANT-like DNA-binding domain 779 864 IPR044822 -
Amo08g2472 874 SMART Lactamase_B_5a 93 293 IPR001279 -
Amo08g2472 874 MobiDBLite consensus disorder prediction 38 64 - -
Amo08g2472 874 ProSiteProfiles Myb-like domain profile. 774 838 IPR001005 -
Amo08g2472 874 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 11 874 - -
Amo08g2472 874 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 438 474 IPR011108 -
Amo08g2472 874 MobiDBLite consensus disorder prediction 694 715 - -
Amo08g2472 874 Pfam Beta-lactamase superfamily domain 104 240 IPR001279 -
Amo08g2472 874 CDD RNaseJ_MBL-fold 84 495 - -
Amo08g2472 874 Gene3D - 782 843 - -
Amo08g2472 874 Gene3D - 282 432 IPR042173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2472 Amo-Chr8 38512974 38520657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2472 782 865 Trihelix Transcription Factor Family AT1G13450 29.412 1.11e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo08g2472 Lactamase_B_2 9.2e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2472 - - gmx:100783850 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2115 01 62626409 62634909 Amo08g2472 08 38512974 38520657 PCT
Amo11g1665 11 72461767 72466187 Amo08g2472 08 38512974 38520657 PCT
Amo08g2472 08 38512974 38520657 Amo01g2115 01 62626409 62634909 PCT
Amo08g2472 08 38512974 38520657 Amo11g1665 11 72461767 72466187 PCT