Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2452 ATGGAGAACACCACCAACACCAACAACACCCACCCTCACCAGCAGGCCCAATCGAGCCCATACCCAGGCCCACCAACACTCCCACCACCTCCCACCACCACCACCGTCGTCCCCGGAGGCGCACCACCACCGTCCTCCGCCGCACCATTCCACCACCTCCTCCAGCAACAACAGCAACAGCTTCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGAACACGTCAACGACTTCAAGAACCACCAGCTTCCATTGGCGCGCATCAAGAAGATCATGAAGGCCGACGAAGACGTTCGCATGATCTCCGCCGAAGCCCCAATCCTCTTCGCCAAAGCCTGCGAGCTCTTCATCCTCGAGCTCACGATCCGTTCATGGCTTCACGCCGAAGAGAACAAGCGAAGGACACTTCAGAAGAACGACATCGCCGCCGCCATTACGCGAACCGACATCTTCGATTTCTTAGTTGATATTGTTCCCAGGGACGATATCAAGGACGATGCGGCGGCTCTCGGCGGTATTGTGGCCGCTGCTGCGGCGGCTACTGCCAGTGGTGTTCCGTACTATTATCCGCCCATGGGCCAGCCCGCGGGCCCGCCTGGCGGCATGATGATTGGCAGGCCCGCAGTGGACCCGGCAACGGGGGTTTACGTGCAGCCGCCGTCGCAGGCGTGGCAGAGTGTTTGGCAGACTGCTGCGGAGGATGGCTGCTATGGGAGTGGCGCCACCGCCGCTCAAGGGAATCTTGATGGACAGAGCTGA 759 0.6021 MENTTNTNNTHPHQQAQSSPYPGPPTLPPPPTTTTVVPGGAPPPSSAAPFHHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDIKDDAAALGGIVAAAAAATASGVPYYYPPMGQPAGPPGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTAAEDGCYGSGATAAQGNLDGQS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2452 252 SUPERFAMILY Histone-fold 41 154 IPR009072 GO:0046982
Amo08g2452 252 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 14 252 - -
Amo08g2452 252 MobiDBLite consensus disorder prediction 18 45 - -
Amo08g2452 252 Gene3D Histone, subunit A 49 160 IPR009072 GO:0046982
Amo08g2452 252 MobiDBLite consensus disorder prediction 1 17 - -
Amo08g2452 252 MobiDBLite consensus disorder prediction 1 49 - -
Amo08g2452 252 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 14 252 - -
Amo08g2452 252 Pfam Core histone H2A/H2B/H3/H4 69 145 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2452 Amo-Chr8 38314536 38318435 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2452 47 251 CCAAT-HAP5 Transcription Factor Family AT3G48590 84.615 6.10e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo08g2452 CBFD_NFYB_HMF 2.8e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2452 - - csv:101213576 310.457