Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2451 ATGCATACCATTCAAAAACACACTAACAAATTAATAATTAACACAACGGGAAACCAAAATAGTACTCAACAACATCAAATAGAGATTGAAAACTTATGGTCTTTTCAACGTCGCGAGGTGGAACAGGCCCACGACTTTAAAAATGGCCTGTTCCCCCTCGCCCGTGTTAGGAAGATGATGAAGGTCGAAGAAGACGTTGACCGGATCTCGGCCGAGGTGCCGGTTGTCTTGGCCAAGGCATGTGATCTCTTCATCCGTAATGTCACCCTCCAATCATGGCACCAAGCTCAGAAAAATAAGCGTTCTATCATCCAACGCCAAGACATCAACTCCACCATGGATTCCTTCAGGGATGCTTGCCATAACATTGAATATTTTAAAAGATTAATGAGCGAAGCTTAG 402 0.4353 MHTIQKHTNKLIINTTGNQNSTQQHQIEIENLWSFQRREVEQAHDFKNGLFPLARVRKMMKVEEDVDRISAEVPVVLAKACDLFIRNVTLQSWHQAQKNKRSIIQRQDINSTMDSFRDACHNIEYFKRLMSEA* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2451 133 SUPERFAMILY Histone-fold 22 115 IPR009072 GO:0046982
Amo08g2451 133 Gene3D Histone, subunit A 13 118 IPR009072 GO:0046982
Amo08g2451 133 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 15 112 IPR027170 GO:0003700|GO:0006355|GO:0016602
Amo08g2451 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 111 IPR003958 -
Amo08g2451 133 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 15 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2451 Amo-Chr8 38308890 38309291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2451 32 113 CCAAT-HAP5 Transcription Factor Family AT5G63470 51.220 1.07e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo08g2451 CBFD_NFYB_HMF 4.4e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2451 - K08066 adu:107463451 228.024