Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2449 ATGGGAAACCAAAATAATACTCGACAACATCAAATAGAGATTGAAAACTTATGGTCCTTTCAACGTCGCGAGGTGGAACAGGCCCACGATTTTAAAAATGGCCTGTTCCCCCTCGCCCGTGTTAGGAAGATGATGAAGGTCGAAGAAGACGTTGACCGGATCTCAGCCGAGGTGCCGGTTGTCTTGGCCAAGGCATGTGATCTCTTCATTCGTAATGTCACCCTCCAATCATGGCACCAAGCTCAGGAAAATAAGCGTTCTATCATCCAACGCCAAGACATCAACTCCACCATGGATTCCTTTAGGGATGCTTACCATAACATTGAATATTTTAAGAGATTAATGAGCGCATCTTAG 357 0.451 MGNQNNTRQHQIEIENLWSFQRREVEQAHDFKNGLFPLARVRKMMKVEEDVDRISAEVPVVLAKACDLFIRNVTLQSWHQAQENKRSIIQRQDINSTMDSFRDAYHNIEYFKRLMSAS* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2449 118 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 97 - -
Amo08g2449 118 SUPERFAMILY Histone-fold 12 100 IPR009072 GO:0046982
Amo08g2449 118 Gene3D Histone, subunit A 1 106 IPR009072 GO:0046982
Amo08g2449 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 96 IPR003958 -
Amo08g2449 118 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 5 97 IPR027170 GO:0003700|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2449 Amo-Chr8 38296190 38296546 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2449 17 98 CCAAT-HAP5 Transcription Factor Family AT5G63470 52.439 1.44e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo08g2449 CBFD_NFYB_HMF 3.6e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2449 - K08066 adu:107463451 238.424