Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2447 ATGGGAAACCAAAATAGTACTCATCAACATCAAATAGAGATTGAGAACTTATGGTCCTTCCAACGCCGCGAGGTGGAACAGGCCAGCGACTTCAAAAGCGGCCTGTTCTCCCTCGATCGCGTTAGGAAGATGATGAAGGTCGAAGAAGACGTTGATCGGATCTCGGCCGAGGTGCCGGTTGTCTTGGCCAAGGCATGTGATCTCTTCATCCGTAATGTCACCCTCCAATCATGGCACCAAGCCCAGAAAAATAAGCGTTCTATCATCCAAGGCCAAGACATCAACTCCACCATGAATTCCTTTAGGGATGCTTGCCATAACATTGAATATTTTAAGAGATTAATGAGCGCATCTTAG 357 0.4678 MGNQNSTHQHQIEIENLWSFQRREVEQASDFKSGLFSLDRVRKMMKVEEDVDRISAEVPVVLAKACDLFIRNVTLQSWHQAQKNKRSIIQGQDINSTMNSFRDACHNIEYFKRLMSAS* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2447 118 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 5 97 IPR027170 GO:0003700|GO:0006355|GO:0016602
Amo08g2447 118 Gene3D Histone, subunit A 1 104 IPR009072 GO:0046982
Amo08g2447 118 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 97 - -
Amo08g2447 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 96 IPR003958 -
Amo08g2447 118 SUPERFAMILY Histone-fold 21 99 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2447 Amo-Chr8 38238006 38238362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2447 17 99 CCAAT-HAP5 Transcription Factor Family AT5G63470 46.988 1.49e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo08g2447 CBFD_NFYB_HMF 4.2e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2447 - K08066 adu:107463451 215.698