Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2446 ATGGGAAACCAAAATAGTACTCAACAGCATCAAATAGAGATTGAGAACTTATGGTCCTTCCAACGCCGCGGGATGGAACAGGCTAGCGACTTCAAAAGCGGCCTGTTCTCCCTCGCTCGCGTTAGGAAGATGATGAAGGTCGAAGAAGACGTTGACCGGATCTCGGCCGAGGTGCCGGTTGTCTTGGCCAAGGCATGTGATCTCTTCATCCGTAATATCACCCTTCAATCATGGCACCAAGCTCAGAAAAATAAGCGTTCTACCATCCAAGGCCAAGACATCAACTCCACCATGGATTCCTTTAGGGATGCTTGCCATAACATTGAATATTTTAAGAGATTAATGAGCGCAGCTTAG 357 0.4734 MGNQNSTQQHQIEIENLWSFQRRGMEQASDFKSGLFSLARVRKMMKVEEDVDRISAEVPVVLAKACDLFIRNITLQSWHQAQKNKRSTIQGQDINSTMDSFRDACHNIEYFKRLMSAA* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2446 118 SUPERFAMILY Histone-fold 23 100 IPR009072 GO:0046982
Amo08g2446 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 96 IPR003958 -
Amo08g2446 118 Gene3D Histone, subunit A 1 103 IPR009072 GO:0046982
Amo08g2446 118 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED 4 97 - -
Amo08g2446 118 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2446 Amo-Chr8 38228190 38228546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2446 17 98 CCAAT-HAP5 Transcription Factor Family AT3G48590 48.780 5.01e-25 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo08g2446 CBFD_NFYB_HMF 1.2e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2446 - K08066 adu:107463451 214.542