Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2406 ATGATGAGCAAGAAGATGAGGTTTGTTAAGAAGAACAAGAATGGAGTGAGATTATTGCCACCTGGATTTAGGTTCCAACCAACAGAAGAGGAGCTTCTATTTCAGTATTTGAAATGCAAGGTTTTCTCTTTTCAGTTGCCAGCTTCAATCATTCCTGAGATCAATGTATGCAACTATGATCCTTGGGATTTGCCAGGGAATAATAATAATTATGGGGAGCAAGAAGAGAGATACTTGTTCAGCTCAAAGGAAGTTAAGTATAGAAACGGTAACCGAATGAACAGAATAACGAAATCTGGATATTGGAAAGCAACTGGATCAGACAAAAGAATAATTTCAACATCATGTAATAATAATAATAATAGTAATATTGTTGGGATAAGAAAAACTCTTGTATTCTATCATGGAAAATCTCCAAATGGCTCTAGAACTCATTGGATCATGCGTGAGTATCGACTTGTCACTACTCCTTCTAATTCATCCCAGAAGTATGTAGAAGACTTAGGGAATTGGGTTCTTTGCCGCATATTCAAGAAGAAAAGAAGCATAGAAAGTCAACATCACATGGTCAACAACAAAATTAATAATGTTGTCGAGGTGGCTAATAATAATAATAAGCCAATATTCTTTGATTTTATGAGGCTATATGACTCGCCAATATCTTCTTCTTCATCCTCATCTTCTTCTTGTTTAAGTTCTGATTTCATAACTCAAGTGTAA 720 0.35 MMSKKMRFVKKNKNGVRLLPPGFRFQPTEEELLFQYLKCKVFSFQLPASIIPEINVCNYDPWDLPGNNNNYGEQEERYLFSSKEVKYRNGNRMNRITKSGYWKATGSDKRIISTSCNNNNNSNIVGIRKTLVFYHGKSPNGSRTHWIMREYRLVTTPSNSSQKYVEDLGNWVLCRIFKKKRSIESQHHMVNNKINNVVEVANNNNKPIFFDFMRLYDSPISSSSSSSSSCLSSDFITQV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2406 239 Pfam No apical meristem (NAM) protein 20 153 IPR003441 GO:0003677|GO:0006355
Amo08g2406 239 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 237 - -
Amo08g2406 239 SUPERFAMILY NAC domain 17 179 IPR036093 GO:0003677|GO:0006355
Amo08g2406 239 ProSiteProfiles NAC domain profile. 19 179 IPR003441 GO:0003677|GO:0006355
Amo08g2406 239 Gene3D NAC domain 28 184 IPR036093 GO:0003677|GO:0006355
Amo08g2406 239 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2406 Amo-Chr8 37773310 37775795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2406 6 214 NAC Transcription Factor Family AT5G13180 53.571 2.55e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo08g2406 NAM 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2406 - - aprc:113868555 275.789