Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2404 ATGGGTTGCGTGTTCGGGAAGCCGTCCGGTAACGAAGCTCAGCACCGTCACCGGAACAAACAGAGAAGCTCTGCTCGCGATGCAAGCGATAATAGTGATATTAATAATGCCGTTAGGGTTCGGGAAAAGCAGAGGAACCGCCGGAACTCCGGCGGCGATGTTCCGGTAAGCCTTCCGGCACCGGAACGCCGGAAGCCGAGGCTCGATCCGTTCGCGGTTACTCAGCAGGGATGGCCGTCGTGGCTTATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGCCGCGCCAACACCTTTGAGAAACTCGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCAAGGGACCTTTTGAGTGGAAAGATTGTGGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTCTGAGGAAGCTTGATCATCCAAATGTTGTGAAGCTTGAGGGATTGGTCACTTCAAGAATGTCTTGCAGCCTTTACTTGGTTTTTGAGTATATGGAACATGATCTTGCAGGTCTTGCAGCTGGTCAAGGTGTCAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTGCTCTCAGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACAACGAAGGAATCCTTAAAATTGCAGATTTTGGATTGGCAACTTTCTTTGACCCTAAGCAGAAGCAGGTCTTGACGAGCCGAGTTGTAACTCTCTGGTATCGTCCCCCTGAGCTGCTTCTTGGAGCCACATTTTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGTTGTATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGGACAGAGGTTGAACAACTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAAATTGCCAAATGCTACAATTTTTAAGCCACAGCAGCCATATAAACGTTGCATCACAGAAACTTTCAAGGATTTCCCCCCATCTTCAATACCTCTGATTGAAACTCTTCTTGCAATAGATCCTGATGGTCGTGGCACTGCCTCAGCTGCTCTAAATAGCGAATTCTTTACAACTGAGCCCTATGCTTGTGAACCTTCGAGTTTACCAAAGTATCCTCCCAGCAAAGAACTGGATGTAAAACTAAGAGATGAAGAAGCAAGAAGGCAAAAAGCTCTACATGGAAAGGCTAATGATGGTGCCAAAAGAGTCAGAGCACGTGAGCGTGGTCGAGCTATTCCGGCCCCTGAAGCTAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTAGTGAACCACACAAATGCAAAGAGCAAGAGTGAGAAATTTCCACCCCCTCATCAAGATGGAGCTGTTGGATATCCACAAGATGCATCTTCACAAAAAGGGCCTGTTTCATTTGGTGCCACTGACACTACTTCCTTTGGCTCAGAGACATTTGATTCTAAACAATCTCATCATGATGGAACTCATAGAGGTAGGAAAACCAGAAAAGAAGACTCAAACACTGCCTCATCATGGAAATTCATGCGTCCATTCAAACCATCAACAGTTGGTCTTTCAATGGATTTATTATTTAGGAGCAAATAA 1677 0.4609 MGCVFGKPSGNEAQHRHRNKQRSSARDASDNSDINNAVRVREKQRNRRNSGGDVPVSLPAPERRKPRLDPFAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLLSGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPKQKQVLTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATIFKPQQPYKRCITETFKDFPPSSIPLIETLLAIDPDGRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALHGKANDGAKRVRARERGRAIPAPEANAEIQTNLDRWRVVNHTNAKSKSEKFPPPHQDGAVGYPQDASSQKGPVSFGATDTTSFGSETFDSKQSHHDGTHRGRKTRKEDSNTASSWKFMRPFKPSTVGLSMDLLFRSK* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2404 558 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2404 558 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2404 558 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2404 558 MobiDBLite consensus disorder prediction 510 533 - -
Amo08g2404 558 CDD STKc_CDK9_like 101 385 - -
Amo08g2404 558 PANTHER CELL DIVISION PROTEIN KINASE 68 523 - -
Amo08g2404 558 MobiDBLite consensus disorder prediction 420 442 - -
Amo08g2404 558 MobiDBLite consensus disorder prediction 11 27 - -
Amo08g2404 558 MobiDBLite consensus disorder prediction 420 537 - -
Amo08g2404 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Amo08g2404 558 MobiDBLite consensus disorder prediction 488 509 - -
Amo08g2404 558 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 68 523 - -
Amo08g2404 558 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Amo08g2404 558 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Amo08g2404 558 MobiDBLite consensus disorder prediction 1 69 - -
Amo08g2404 558 Gene3D Transferase(Phosphotransferase) domain 1 184 425 - -
Amo08g2404 558 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2404 Amo-Chr8 37738236 37742656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2404 93 422 Core Cell Cycle Gene Families AT5G10270 51.275 3.48e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo08g2404 Pkinase 2.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2404 K08819 - gmx:100807756 958.362