Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2393 ATGATGGCTGCTTTTTCTTCATACCAATATCACCCTAATTTTCTTCCTCTTGACTCTACATTCTTCCAAAACCTAAACACAACAACAACAACTAGTGTTCCTATTCCCCAATCAATTCTTCATCATCATCAAGAAGAAGGGTTCTCTGATTTCAATAATAATACTATAAGCTGTGTTGATCAAATAAGCTCTTGCAACAAGGTTTCATTCATAAGTAATAGTGACAATGAGCCTTCAAATGTTTCTGTCACTACAAGAAACAACCTTAGTCCTCAATCTTCCATGGTAGTTGATAAGCTTGAAATTGGTGAACAAGTTACTCAAAAGGATGGAACAACAAGGAAGAGAATGAGGAAGAGCAATAATAATAATGGCGGTGGTGTGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAGCGGCTTGTGCCAGGCTGTGATAAGGTGACTGGGAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAATCTTTACAGAATCAAGTAGAGTTCTTGTCTTTGAAGCTTGCTTCGGAGAACGGTAGTCAATTCTGGGACACAGAAGAGCAAAGACAAAAATTTCTTCATCCATATGAATTCATCAACAACAACAACTTATGTTCCTTTCATTAG 642 0.3707 MMAAFSSYQYHPNFLPLDSTFFQNLNTTTTTSVPIPQSILHHHQEEGFSDFNNNTISCVDQISSCNKVSFISNSDNEPSNVSVTTRNNLSPQSSMVVDKLEIGEQVTQKDGTTRKRMRKSNNNNGGGVVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSLKLASENGSQFWDTEEQRQKFLHPYEFINNNNLCSFH* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2393 213 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 129 183 - -
Amo08g2393 213 Gene3D - 129 194 IPR036638 GO:0046983
Amo08g2393 213 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 181 213 IPR024097 GO:0006355
Amo08g2393 213 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 121 IPR024097 GO:0006355
Amo08g2393 213 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 2 121 - -
Amo08g2393 213 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 181 213 - -
Amo08g2393 213 SMART finulus 129 174 IPR011598 GO:0046983
Amo08g2393 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 168 IPR011598 GO:0046983
Amo08g2393 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 180 IPR036638 GO:0046983
Amo08g2393 213 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 129 183 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2393 Amo-Chr8 37582913 37585460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2393 2 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 36.564 5.64e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2393 - - ahf:112708119 280.796