Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2389 ATGCTTCCAGGACAAGCAGAAAACATAGAATTTGAACAGTTCTCAGGATATGTAAGTGTTGATGAAAAGAAGCACAAGAATCTCTTCTATTATTTTGTTGAATCACAAACTCATCCTTCTTCAAAACCTCTTGTTCTCTGGCTCAATGGAGGACCTGGTTGTTCATCACTTGGAGTTGGTGCATTCTCTGAAAATGGACCATTTAGGCCAAATGGAGAGGACAATGTTGTATTTCTTCAACGCTGGTTCAACAAGTTCCCTCAATACAAGAACCGAGATCTGTTTCTAACTGGCGAAAGTTATGCAGGGCATTATGTTCCTCAACTTGCAAAGCTCATGATTGAAATGAATTCAAAGAAAAGGATGTTCAATCTCAAAGGAATAGCTTTGGGTAATCCAGTTCTAGAATACGCCACAGATTTCAATTCAAGGGCAGAGTTCTTTTGGTCTCATGGACTAATATCAGATTCAACGTACAAGATGTTCAGCAATGTGTGTAACTATTCAAGATATGTGAGTGAGTACTATAGAGATTCACTTTCCATGGTTTGTTCAGAGGTAATGGGACAAGTTAGCAAAGAAACAAGCAAATTTGTTGACAAATATGATGTCACTCTTGATGTTTGCATTTCCTCTGTGCTTTCACAATCAAAGGTTATTTGTCCTCAATCCCAAGAAAAGAATGAGAGGGTAGATGTGTGTGTAGATGACAAGGTTACAAACTACTTGAATAGAAGAGATGTACAACAAGCACTTCATGCCAAGCTTGTTGGTGTAAGAAAATGGGATGTTTGCAGCAACATATTGGACTATGATATGCTTAATGTGGAAATACCTACACTTCCTCTTGTTGGATCACTAGTAAAAGCTGGAGTTAGGGTCCTAATTTACAGTGGAGATCAAGATTCAGTGATTCCACTGACTGGAAGCCGCACTTTGGTTCAAAAGTTGGTGGATGGACTCAAGTTTATGGGAACAATATGCTTTCATTTGCCACACTTTTCCCTCCCTACAAAAATGAGAAAAGACCAACAAAACCAGCATCCTCTACTCATTACTAATCCTTCTCAACAAAATCAGGTATTGTATATGTTGGGAGATATAGCAGCAGGGCCTGCGTACAAGTTCACGCAATGGCTTCAATTGGTTCGTAAACGCACTTCCAAGTTTGGACCTTCTGGATTCCCTAACCGCCTTTCTACCATGCCTTCTTCTAGCCCTGGTGAGGCTATTGAAGATGCAACGAGCGATCAGCCTCCAAAACAAACTGAGGTTAACTTGTGGGAGAGGCTCGGTAAAGCCGAAATGTTGGACATTGAATCAAGCATGTTTTCTTGGGACAGGCTCACTTCGCTTCACCACACTGAACACAGCAGCATCAATGAGAATTCCGAGGATGAAATGAATAAAGCTCTTGAGGTAACTGTAAATTCTGGAGGGGTTGTCTTCTTTGCTTTTTTCAATGGCCTTGGGGGCGATGGTGCTTTTCCGAAAGAAGCAGCGGCCGTTATAAAAATATCATCATCAAGATTGGCAACACAATCAGAACGCCTTGGTTATGAATTTGCTAGGTGGTTGGGAGTTCGAACTCCGCAGGCTAGAGTGATTCACAATACTAGTTCTGAGTGGCTCCAAATAAAGGAAGCTACAGAAAAAGCTAGAGATGCAGCAAGTTCTAAGGGTGATGAGAGTGGCGAAATGACTTGCTCAGAACTTTTGGAAGCACTTGAACTCGGCCGATGTCTCTATTTTATGAGTTATGTACATGGTTCACCTTTGCTTGAAAGTCCCTATGCATTCGAATATCGGGAAACTGCAGAAAGAACATCAGCAGCCCTTGGCAGGGTACTGATGTTGGACCTTGTCATTAGAAATGAAGATAGGCTCCCTTGCCGGCAACTTAGGTGGCGAGGGAACTCCGCAAATTTGTTGTTTGCTGAAAAGTTAATCTCAGCAAATACAGACACACTAGGAGAAGCTTTAGATTCTGCAATGAACCATTACGGACCAAGGGTGGTTCGAGCACTTCAAAATGAGAGGAGGTCAGTTTCAATGGATTCCAAATCAAGTTCTCGGAATCCTACATTGTTATCACAACGCTCAGATGTTTCGGATATAGTGGAATCAGCAATATCTACTAGGATGAGTCTTAATGGTCAAACATCAGGAGAATCACCTTGTACTAACTTTAATGTTGTGGCTATTGATTCTGGTGTTCCTCGCCGGCCCCCTACTGGAAAACGTGCAGATGATCAGACTAATTATCCCAAGTTGGTTGAGTTGCTACTTAACAGTTCCGAGTTTTCCTCAAACCTGCTATATGATATAACCGGAGGCAAATTAGGATGTCCTGCACCAGAAGACATAAATCCGGTAACTGATGTACCTGCAACTGCTAGTGACATAACAGTAGTTCATGAGTTTCGTTGTAGTTTTCGCGCTGCTCTTAGGGATCTGCAGGGGTTCTATATATTCCTACTGACACTTCACCAGAAACTTGATAACATGTTAAGATCCCTTATGAATATTATAAGCAAAATTTCGTCTTTGGAATCTGAAAAAGATGAATTTTCTTCACCCATTGCTGCTGGTAGCAGTTCCTCTCCAACAGGTAGAGAGAGGTCTCCTCATGATAACCATCATGATTGTTGTGACTCCGGGTCTGCATCAAGAGAAGGTTGTCATGGAAAGCACTCAAAAGGAAGCGCAGAATCACATAGTGGTCTTCGCTTAACAGCTAAGCTTCGAGACTTCAATAAATTTGCAAAGGTTGATGCTGAATCTAGTAAAGAACTGGAACAGTGGAATGAAATGCTTAAAAATGATGTCATCAAGTTATGCCAAGACAACAATTTCAATACAGGTTTTTTCGAAGGTAGTGACGACAACTTTGTCATTGATGCATATGAACTGAAGATAAGACTTGAGCATATCCTTGAGAGGATTGTGTTGATATCTGAGGCTGCGAATACAGAGAAACCTTCCGCCATTACAAATACTCTCTATGTTGGTGGAGCACTGGCTGCAAGATCTATATACACGTTGCAACGCTTGGGAATCACACATATATTGTGTTTGTGTACTAACGAAATTGGACAGGCCGATTCTCAGTTTCCTGATCTATTTACATATAAAAATTTCTCTGTGAGTGACAATGAAGATTGTAACATCAGCAGGATATTTGAAGAAGCTTGTGATTTTATAGATTATGTTGAGCAGATTGGTCAGAGAGTTTTAGTTCATTGTTTTGAGGGGAGAAGCAGAAGTGTTACTCTGGTTCTTGCTTACTTAATGCTCAGAAAGAAGTTCACTCTTTTAGAAGCATGGAACACACTGAAGCGAGTACACCGCCGAGCACAGCCAAACGACGGTTTTGCAAAGATCTTACAGGAACTGGATAAAAAGCTGCATGGAAAGGTATCTATGGAGTGGCAACAACGAAAACCAACAATGAAAGTTTGCCCCATCTGCGGCAAGAATGCCGGATTAAGCAGCAGCTCACTTAAGCTCCATCTCCAGAAGTTGCATAAAAAGCTGTCGTCCGGGAGTGTAGATAGTGCCATGACAATGGAAATACAGAAGGCACTGACGGCTTTGAAGGTTAGCCGCGGCGGTAGTGTTAGCCCGACACAGAGGCAGTCTCAGTCAATGATAGATGAATAG 3663 0.4163 MLPGQAENIEFEQFSGYVSVDEKKHKNLFYYFVESQTHPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEDNVVFLQRWFNKFPQYKNRDLFLTGESYAGHYVPQLAKLMIEMNSKKRMFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYKMFSNVCNYSRYVSEYYRDSLSMVCSEVMGQVSKETSKFVDKYDVTLDVCISSVLSQSKVICPQSQEKNERVDVCVDDKVTNYLNRRDVQQALHAKLVGVRKWDVCSNILDYDMLNVEIPTLPLVGSLVKAGVRVLIYSGDQDSVIPLTGSRTLVQKLVDGLKFMGTICFHLPHFSLPTKMRKDQQNQHPLLITNPSQQNQVLYMLGDIAAGPAYKFTQWLQLVRKRTSKFGPSGFPNRLSTMPSSSPGEAIEDATSDQPPKQTEVNLWERLGKAEMLDIESSMFSWDRLTSLHHTEHSSINENSEDEMNKALEVTVNSGGVVFFAFFNGLGGDGAFPKEAAAVIKISSSRLATQSERLGYEFARWLGVRTPQARVIHNTSSEWLQIKEATEKARDAASSKGDESGEMTCSELLEALELGRCLYFMSYVHGSPLLESPYAFEYRETAERTSAALGRVLMLDLVIRNEDRLPCRQLRWRGNSANLLFAEKLISANTDTLGEALDSAMNHYGPRVVRALQNERRSVSMDSKSSSRNPTLLSQRSDVSDIVESAISTRMSLNGQTSGESPCTNFNVVAIDSGVPRRPPTGKRADDQTNYPKLVELLLNSSEFSSNLLYDITGGKLGCPAPEDINPVTDVPATASDITVVHEFRCSFRAALRDLQGFYIFLLTLHQKLDNMLRSLMNIISKISSLESEKDEFSSPIAAGSSSSPTGRERSPHDNHHDCCDSGSASREGCHGKHSKGSAESHSGLRLTAKLRDFNKFAKVDAESSKELEQWNEMLKNDVIKLCQDNNFNTGFFEGSDDNFVIDAYELKIRLEHILERIVLISEAANTEKPSAITNTLYVGGALAARSIYTLQRLGITHILCLCTNEIGQADSQFPDLFTYKNFSVSDNEDCNISRIFEEACDFIDYVEQIGQRVLVHCFEGRSRSVTLVLAYLMLRKKFTLLEAWNTLKRVHRRAQPNDGFAKILQELDKKLHGKVSMEWQQRKPTMKVCPICGKNAGLSSSSLKLHLQKLHKKLSSGSVDSAMTMEIQKALTALKVSRGGSVSPTQRQSQSMIDE* 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2389 1220 Pfam Dual specificity phosphatase, catalytic domain 1001 1133 IPR000340 GO:0008138|GO:0016311
Amo08g2389 1220 MobiDBLite consensus disorder prediction 873 907 - -
Amo08g2389 1220 Gene3D Protein tyrosine phosphatase superfamily 976 1148 IPR029021 -
Amo08g2389 1220 Gene3D alpha/beta hydrolase 1 74 IPR029058 -
Amo08g2389 1220 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 349 1220 IPR035010 GO:0004721|GO:0009737|GO:0043622
Amo08g2389 1220 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 992 1138 IPR029021 -
Amo08g2389 1220 SUPERFAMILY alpha/beta-Hydrolases 2 317 IPR029058 -
Amo08g2389 1220 Gene3D - 598 743 IPR036940 GO:0016301
Amo08g2389 1220 Pfam Serine carboxypeptidase 72 317 IPR001563 GO:0004185|GO:0006508
Amo08g2389 1220 Pfam Serine carboxypeptidase 3 71 IPR001563 GO:0004185|GO:0006508
Amo08g2389 1220 MobiDBLite consensus disorder prediction 680 699 - -
Amo08g2389 1220 MobiDBLite consensus disorder prediction 858 907 - -
Amo08g2389 1220 ProSitePatterns Serine carboxypeptidases, serine active site. 96 103 IPR018202 GO:0004185
Amo08g2389 1220 MobiDBLite consensus disorder prediction 679 699 - -
Amo08g2389 1220 SMART dsp_5 993 1135 IPR020422 GO:0006470|GO:0008138
Amo08g2389 1220 Pfam Actin-fragmin kinase, catalytic 424 679 IPR015275 -
Amo08g2389 1220 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 1062 1114 IPR000387 GO:0016311|GO:0016791
Amo08g2389 1220 Gene3D alpha/beta hydrolase 75 324 IPR029058 -
Amo08g2389 1220 SUPERFAMILY Protein kinase-like (PK-like) 378 752 IPR011009 -
Amo08g2389 1220 MobiDBLite consensus disorder prediction 393 422 - -
Amo08g2389 1220 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 349 1220 - -
Amo08g2389 1220 ProSiteProfiles Dual specificity protein phosphatase domain profile. 993 1138 IPR020422 GO:0006470|GO:0008138
Amo08g2389 1220 CDD DSP 994 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2389 Amo-Chr8 37510539 37522408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2389 345 1204 Protein tyrosine phosphatase (PTP) family AT5G23720 61.298 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2389 K14165 - gmx:102661225 1231.08