Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2387 ATGATGTCGTCGTCTTGGGCATCAATGGAAGCTGAGAGAGAACACCAACAACAAACCCACAACGACCATGATTTCACTTCCTTATGTTCTTTCAACAATAACTTGCCTTTCATGGAGGTTGATGATGTCAATGACATCATGACGATGATGACGATGATGAGAGACATGTCTAACTTCTTCCCTGAACCAGACACCACCAACAACAACAACCTCGTACTCCTTCATCATCACTCATCATCATCTTCTTCTTCTTCTTCTTCGTCATCACACCTTCAATGCTTTCTCCCTCCTCCTCCACCAAACCCATTTGACATGCCTACCATGGCTTCCTTCCTTGACCCTCATCAAGCTTCCATAACCGCCACTACTGATTTTGGAGGTTTTCATCATCACAACTTGGAGGAACTAGGTTCTTGTTCTTCTTCTGGAAAGCCCGCACCACCACCACCACCACCACCACCACCACTGTTCTTCAACAGATCCAAGATTCTGAGGCCGCTTGATGATTCTCTACCTTCATCTGGAGCACAACCAACTCTGTTTCAGAAGAGAGCAGCACTCAGAAAAAACAACTCCTCATCACAACAACAACAACAAGGTGGTGTTCTTGGAGAAGGTGATAACAATAATAATAGTATGAAGAGAAAGGTGATGATGGAGATGGAAGATAATGGAAGCTTTGATGGGTCATCGGCATTCAACTATGATTCCGGCGATGACTTGATTGAAACCAATAACAAGAAGAATAATCAGAAAGGAGGTGGTGCCAAGAATAAGAAAGGGATGCCGGCCAAGAACTTGATGGCGGAGCGCCGTCGCCGGAAGAAGCTCAATGATAGGCTCTACATGCTCAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATATTAGGAGATGCAATTGAATATCTGAGGGAACTGCTGCAGAGAATCAATGAGCTTCATAATGAATTGGAATCATCACCATCAACAACAACAACTACTACTAATTCTGGAAGTAGTTCACTCATCACAGCAGTACCAACAGTAGTAGCCTCATCAAGCTTTTATCCATTGACACCAACTCCACCATCACTCCCAACCCGCATTAAAGAAGAGATTTGCCCCACTTCACTTCCTAGTCCCAATGCTCAACCTCCTAGGGTTGAGGTGAGGTTGAGAGAAGGAAGGGCAGTGAACATTCACATGTTTTGTGGTCGGAAAGCAGGGCTTCTGCTGTCAACAATGAGGGCATTGGACACACTTGGCTTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGTTTTGCTTTGGATATTTTCAGAGCTGAGCAATGCAAAGAAGGTCAAGATGTGCATCCAGAGCAAATCAAGGCAGTGCTCTTGGATACAGCTGGGTACCCTGCCATCATCTAA 1407 0.4478 MMSSSWASMEAEREHQQQTHNDHDFTSLCSFNNNLPFMEVDDVNDIMTMMTMMRDMSNFFPEPDTTNNNNLVLLHHHSSSSSSSSSSSSHLQCFLPPPPPNPFDMPTMASFLDPHQASITATTDFGGFHHHNLEELGSCSSSGKPAPPPPPPPPPLFFNRSKILRPLDDSLPSSGAQPTLFQKRAALRKNNSSSQQQQQGGVLGEGDNNNNSMKRKVMMEMEDNGSFDGSSAFNYDSGDDLIETNNKKNNQKGGGAKNKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLRELLQRINELHNELESSPSTTTTTTNSGSSSLITAVPTVVASSSFYPLTPTPPSLPTRIKEEICPTSLPSPNAQPPRVEVRLREGRAVNIHMFCGRKAGLLLSTMRALDTLGLDIQQAVISCFNGFALDIFRAEQCKEGQDVHPEQIKAVLLDTAGYPAII* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2387 468 MobiDBLite consensus disorder prediction 76 92 - -
Amo08g2387 468 MobiDBLite consensus disorder prediction 76 102 - -
Amo08g2387 468 Gene3D - 256 325 IPR036638 GO:0046983
Amo08g2387 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Amo08g2387 468 Coils Coil 300 324 - -
Amo08g2387 468 MobiDBLite consensus disorder prediction 143 159 - -
Amo08g2387 468 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 465 - -
Amo08g2387 468 SMART finulus 267 316 IPR011598 GO:0046983
Amo08g2387 468 CDD ACT_UUR-ACR-like 397 457 - -
Amo08g2387 468 MobiDBLite consensus disorder prediction 238 263 - -
Amo08g2387 468 MobiDBLite consensus disorder prediction 134 160 - -
Amo08g2387 468 Pfam Helix-loop-helix DNA-binding domain 268 310 IPR011598 GO:0046983
Amo08g2387 468 MobiDBLite consensus disorder prediction 186 211 - -
Amo08g2387 468 CDD bHLH_AtAMS_like 264 322 - -
Amo08g2387 468 MobiDBLite consensus disorder prediction 1 21 - -
Amo08g2387 468 PANTHER BHLH TRANSCRIPTIONAL FACTOR 83 465 - -
Amo08g2387 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 324 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2387 Amo-Chr8 37470865 37476056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2387 159 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 60.900 5.70e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g2387 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2387 - - vra:106778861 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2631 03 114288639 114293119 Amo08g2387 08 37470865 37476056 PCT
Amo08g2387 08 37470865 37476056 Amo03g2631 03 114288639 114293119 PCT