Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2386 ATGGCATCATCGGAGGCAGCAACAACCATCAAGGTTAATGGTAATTCTCACAACAATAACAACAACAACAACAACTCTTCGGAGCTGAACAACAATGTTCATTCTTCATCTTCTTCCTCCACCTCACCCAAAGACGCGGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTTACAGTTCCAAGAGAAGGAGAAAGAGTTTTCTATTTCCCTCAGGGACACATAGAACAGGTGGAGGCGTCAACAAATCAGGTGGCTGACCAACACATGCCTGTGTACGATCTTCCTTCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTCAAGGCGGAGCCCGACACGGATGAGGTGTTTGCCCAGATTACCTTGCTTCCGGAACAAAATCAAGATGAGAGTGCGGTCGAGAAAGAACCTCCACTGCCACCACCACCGCGCTTCCATGTACATTCATTCTGTAAGACGCTGACCGCATCTGATACAAGCACCCATGGTGGGTTTTCCGTTCTGAGGCGACATGCTGACGAGGATTGCTCATCTTTTGGACAGGATATGTCAAAGCAGCCGCCTACCCAGGAATTGGTGGCGAAGGATTTGCATGCGAATGAATGGCGATTTAGGCACATATTCCGAGGTCAACCTCGGAGGCACTTGCTTCAAAGTGGCTGGAGTGTTTTTGTTAGCTCCAAGAGGCTAGTTGCTGGGGATGCCTTCATATTCTTAAGAACTTCCAGAGGTGAGAATGGGGAGCTTCGTGTGGGCGTACGGAGAGCCATGAGACAGCAGGGGAATGTCCCATCCTCGGTTATTTCTAGCCACAGTATGCATCTTGGGGTTCTTGCAACTGCTTGGCATGCCATCTTGACAGGAACCATATTCACTGTTTATTATAAACCGAGGACTAGTCCTGCTGAGTTCATTGTTCCATACGACCAATATATGGAATCTCTAAAGAATAATTACACCATAGGGATGCGGTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAACAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGCTGACTCAAAAAGGTGGCCTGAATCAAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATTCCCCATCCAGAGAGGGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTGAACCCTCTTTCAATGCCCAGGGCTAAAAGGCCTCGATCTAATGTACCTAATGTACCAATTCAATCATCCCAAGATTCTTCTGTTCTAACTCGAGAAGCATCGTCTAAAGTAAGCGCAGACCCTTCACCAGCAAATGGATTCCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGTGGCAATTTCGCAGAAAGTAACGAGTCCGACACAGCTGAGAAATCTGTTGTTTGGCCACCTGTAGATGATGAGAAAGTTGATGTTGTTTCAATGTCACGGAGGTACGGTTCAGAGAACTGGATGTCAATGGGAAGGCATGACACGTCCTATTCAGATCTTCTTTCAGGCTTTGGGGCCAGCGGAGATCCGTCCCATCCATCCTTGGGAGATCAAATGGGTGGACCTGTGGCCTACTCTGCCAGAAAGCATGTGTTAGATCACGAAGGCAAACTTAATGTGCATCATCCTTGGCCAGCAATGTCCTCAGGTTTTTCACTAAACCTCTTGGAGCCTAGTACGAAAGAATCTCCACGCGGCAGCGAAACACCTTACCAAGCTCGAGGGAATTTGAGGTACGGCCCATTCAGTGAATATCCGGTCATTCCTGGTCACAAAGTTGAGCATCCACATGGAAAGTTGATGCTGCCACCACCCCCAACTCAATACGAGAGTCCTTGTTCAAGAGACCTTATGTCCAAACCAATGTCAGCGAAAACATATGAGACAGCGAAACCAAAAGAAGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCCCTACTGCTGCACCGGAGCCTTCTGTATCACATAGAAGTGGGACGACTGAGCCAGCTGGTCAAGCACATCTCAAATCACACCACCAACACACTTCTGAAAATGATCAGAAAACAGAACAATCAAAGGGCTTGAAATCGGCAGATGGTCAAGTTATTGTTGATGACCATGACAAACCGTCAAAAACTTCCCAGGTGCATCTTAAAGATGGTCAGGCCAAACCACTAAGCAGCTCAGCTAGGAGTTGCACTAAGGTCCACAAGAAGGGGATTGCGCTTGGTAGGTCTGTGGATCTGACAAAGTACAGCAACTATGATGAATTGGTTGCTGAATTGGATCAGCTGTTTGAATTTGGAGGTGAATTAATGTCAACAAGAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTCGTTGGGGACGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTACCCGAAAGAGGAGATTCAAAAGATGAGCCCAGGTACCTTAAGTTCAAGAAATGAAGAGAATCATTCAGCTAGTGAAGGAACTGAGGCAAAAGAAGTCAAAAGTCAGCTGCACCAGAAGTTAAATTCAGAAAGTGTGGCTACGGTCCACGATAATTAG 2610 0.469 MASSEAATTIKVNGNSHNNNNNNNNSSELNNNVHSSSSSSTSPKDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQITLLPEQNQDESAVEKEPPLPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADEDCSSFGQDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRTSRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRCLKVRWDETSNIPHPERVSPWKIEPALAPPALNPLSMPRAKRPRSNVPNVPIQSSQDSSVLTREASSKVSADPSPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPVDDEKVDVVSMSRRYGSENWMSMGRHDTSYSDLLSGFGASGDPSHPSLGDQMGGPVAYSARKHVLDHEGKLNVHHPWPAMSSGFSLNLLEPSTKESPRGSETPYQARGNLRYGPFSEYPVIPGHKVEHPHGKLMLPPPPTQYESPCSRDLMSKPMSAKTYETAKPKEGDCKLFGISLISSPTAAPEPSVSHRSGTTEPAGQAHLKSHHQHTSENDQKTEQSKGLKSADGQVIVDDHDKPSKTSQVHLKDGQAKPLSSSARSCTKVHKKGIALGRSVDLTKYSNYDELVAELDQLFEFGGELMSTRKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEENHSASEGTEAKEVKSQLHQKLNSESVATVHDN* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2386 869 MobiDBLite consensus disorder prediction 659 680 - -
Amo08g2386 869 Gene3D - 324 394 - -
Amo08g2386 869 MobiDBLite consensus disorder prediction 681 700 - -
Amo08g2386 869 SMART B3_2 156 263 IPR003340 GO:0003677
Amo08g2386 869 MobiDBLite consensus disorder prediction 413 439 - -
Amo08g2386 869 CDD B3_DNA 154 261 IPR003340 GO:0003677
Amo08g2386 869 Pfam B3 DNA binding domain 156 262 IPR003340 GO:0003677
Amo08g2386 869 MobiDBLite consensus disorder prediction 839 855 - -
Amo08g2386 869 ProSiteProfiles B3 DNA-binding domain profile. 156 263 IPR003340 GO:0003677
Amo08g2386 869 Pfam AUX/IAA family 782 825 IPR033389 -
Amo08g2386 869 Pfam AUX/IAA family 722 774 IPR033389 -
Amo08g2386 869 ProSiteProfiles PB1 domain profile. 738 820 IPR000270 GO:0005515
Amo08g2386 869 MobiDBLite consensus disorder prediction 659 738 - -
Amo08g2386 869 Gene3D - 153 263 IPR015300 -
Amo08g2386 869 SUPERFAMILY CAD & PB1 domains 738 815 - -
Amo08g2386 869 MobiDBLite consensus disorder prediction 707 722 - -
Amo08g2386 869 MobiDBLite consensus disorder prediction 395 447 - -
Amo08g2386 869 MobiDBLite consensus disorder prediction 723 738 - -
Amo08g2386 869 PANTHER AUXIN RESPONSE FACTOR 2 36 845 - -
Amo08g2386 869 Pfam Auxin response factor 287 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo08g2386 869 MobiDBLite consensus disorder prediction 1 44 - -
Amo08g2386 869 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 36 845 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo08g2386 869 SUPERFAMILY DNA-binding pseudobarrel domain 152 290 IPR015300 -
Amo08g2386 869 MobiDBLite consensus disorder prediction 827 869 - -
Amo08g2386 869 Gene3D - 734 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2386 Amo-Chr8 37464248 37468415 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2386 1 860 B3 DNA Binding Superfamily AT5G62000 62.202 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo08g2386 AUX_IAA 8.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2386 - - aip:107612759 1628.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g2632 03 114293122 114310261 Amo08g2386 08 37464248 37468415 PCT
Amo08g2386 08 37464248 37468415 Amo01g2135 01 64224038 64226820 PCT