Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2382 ATGCCTCTCGTTTCTTCTCTTTTCTCTTTTGATCCAATAACACAACAACATCAACATCCTTCCAGCATGTATTTCGCCAAATTACAGGACTCTCCCATGTTCCGCCAACAGCTGCAGACCATGGAAGAAGGTGCAGAATCGTTACGTGCCAGATGCTGGAGATTCTACAAAGGGTGTAAAAAGTACACGGATGGGCTTTTAGATGCATGTGATGGAGACTTCACCTTTGCAAGTGCCCTCGAAAATTTTGGGGGAGAACATTCTGATCCTTTATTTGTAACTTTGGGAGGGCCTGTTATGACCAAATTCTCTATGGCTTTGAGAGACATCAGTACATTCAAGGACGCTCTTAGGACACAGGTGGAGCAAATGTTGACTGACCGTCTACTTCACATTTACAATGTCGAAATAATGGATGTCAAGGAAGCTCGAAAGCGTTTTGACAAGGCTTCCATTGCATATGACCAGGCACGGGAGAAGTTTATGTCATTGAGGAAAAGTACTAGGCAGGATATCGTCATTGCAATAGAGGAGGAATTGCACAATGCAAGAAGCTCATTTGAAGAAGCCCGTTTCAATCTGATTAGTGCTCTTCACAATGTCGAGGCCAAAAAAAGATTCGAGTTTTTGGAGGCTGTCACTGGAGTAATGGATGCTCATCTTCAATATTTTCGACAGGGATATGAACTACTACATCAGTTGGAGCCCTTCATTGTTGAGGTTTTGTCATATGTACAAAAAGCAAGGGAAAGTCACAATGAGGAGCAGGTTTCTCTATTTGAAAGAATGATAGAGTACAAGCAACTTGTCCATCAAGAAAGTAAGTTGTCCTTGAAGGGATTTTATGATTCTCCTGGTCGAGACTCTCCATTTTCTAGGATATCAAGTGATGTGTTAGATGCAGTAACAGAATCTGTCAAAACCGGAAAGGTTCAAACCATTCGAGAAGGGTTTCTCTCAAAACGATCCAGCAATTTAAGAGGCGATTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGCAAACCATTGACTCTCTTCCATGGTGCCAACTCGCAGAAGAGTCATCATACCTTTGATAATTCTTCTGGCATTTTGAGTCGGTTGATATCTTCACATATTCATGGAGCCAATGATGAAAAGCCCGTTGCTCGTCATACGGTGAACTTGCTTACATCAACAATCAAGGTTGATGCGGAACAGACAGATTTAAGATTCTGCTTTAGGATTGTTTCTCCTTCAAAGGTTTATACATTGCAGGCAGAAAATGCCCTGGACCAAAGGGATTGGATGGAAAAGATAACCGGAGTAATTGCATCCTTGCTCACTATACACACACTGGGAAAGCCTCAGCCTGTAATTTCTCGCTCAGAAGGTGGTGACTGGGATTCTGCCAGCCCAACTGATTCAGTACAAAGTTCTTCTGATGATGAAATGGCAGTAAATTCAGGTTTGGCATGCAAGATCACCCCCAAGTCAAATAGGTCACCTAATGGCTTGCAGAAGCATAAACACAGTATAAAATGTGAAAAGCCAATCGATGTTCTTCGAAGGGTTAATGGGAATGACAAATGTGCTGATTGTGGTAAATCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCTGGTGTTCATCGAAATCTTGGTGTACATATATCCAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGATTCCTCAGTTTTAAGCATGTTTCAATCACTTGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGTTATTGCATTCGAAAACTTCAACAGATGATACTCTTGATGGATCATCTAAGGGCACCAGAACCAAATTATTTCATGCAAGAAAACCTGCATATGATGATCCCATTTCACTAAAGGAGAGGTTCATCCATGCAAAGTATTCTGAGAAAGTCTTCGTTCGCCGGATACCAAACAACAATCGTCTCCGTACAGTGGCACAACTGGTCTGGGAAAGCATCTTTGCCAATGACAAGAAATCAGTGTACCGGCATATTGTGAGATCCAGTGTGGATATCAATGCTTTAAATTTAAATGGTCAATTTGATGGAAATTCTTTTGCCACGCCTTCTTCAAGTCACTCAAGCATGTCATCTGAAACTGAAAGCCAACTAATGGAGGACATAAAAGATGGCTCAAGTGTGCTTCACTTGGCATGCCTTGTATCTGATGCTGGAATGGTGGAGCTGCTCCTACAGTATGGTGCAGATATAAATGCAGTTGATTCAATTGGTCGAACACCATTACATTACTGCATGTTTAGAGGGAAGATTGCAACTGCAAAATTACTTATTTTAAGGGGGGCCAATACACATGTAGTAGATAAACAAGGAAAGACTCCTCTCATGCTTGCATCAGAACCTAGCAGTGAAATTGTTGGTCTCATATCAAGCAGATGA 2454 0.4161 MPLVSSLFSFDPITQQHQHPSSMYFAKLQDSPMFRQQLQTMEEGAESLRARCWRFYKGCKKYTDGLLDACDGDFTFASALENFGGEHSDPLFVTLGGPVMTKFSMALRDISTFKDALRTQVEQMLTDRLLHIYNVEIMDVKEARKRFDKASIAYDQAREKFMSLRKSTRQDIVIAIEEELHNARSSFEEARFNLISALHNVEAKKRFEFLEAVTGVMDAHLQYFRQGYELLHQLEPFIVEVLSYVQKARESHNEEQVSLFERMIEYKQLVHQESKLSLKGFYDSPGRDSPFSRISSDVLDAVTESVKTGKVQTIREGFLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPLTLFHGANSQKSHHTFDNSSGILSRLISSHIHGANDEKPVARHTVNLLTSTIKVDAEQTDLRFCFRIVSPSKVYTLQAENALDQRDWMEKITGVIASLLTIHTLGKPQPVISRSEGGDWDSASPTDSVQSSSDDEMAVNSGLACKITPKSNRSPNGLQKHKHSIKCEKPIDVLRRVNGNDKCADCGKSEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFQSLGNLFANSVWEELLHSKTSTDDTLDGSSKGTRTKLFHARKPAYDDPISLKERFIHAKYSEKVFVRRIPNNNRLRTVAQLVWESIFANDKKSVYRHIVRSSVDINALNLNGQFDGNSFATPSSSHSSMSSETESQLMEDIKDGSSVLHLACLVSDAGMVELLLQYGADINAVDSIGRTPLHYCMFRGKIATAKLLILRGANTHVVDKQGKTPLMLASEPSSEIVGLISSR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2382 817 Gene3D - 304 452 IPR011993 -
Amo08g2382 817 ProSiteProfiles ARF GTPase-activating proteins domain profile. 516 659 IPR001164 GO:0005096
Amo08g2382 817 PANTHER CENTAURIN/ARF 23 809 IPR045258 GO:0005096
Amo08g2382 817 Gene3D Arf GTPase activating protein 498 658 IPR038508 -
Amo08g2382 817 SMART PH_update 313 447 IPR001849 -
Amo08g2382 817 Pfam BAR domain of APPL family 28 256 - -
Amo08g2382 817 MobiDBLite consensus disorder prediction 459 482 - -
Amo08g2382 817 ProSiteProfiles Ankyrin repeat region circular profile. 729 760 - -
Amo08g2382 817 Coils Coil 140 160 - -
Amo08g2382 817 CDD BAR_SFC_plant 37 237 IPR035670 -
Amo08g2382 817 SUPERFAMILY ArfGap/RecO-like zinc finger 516 654 IPR037278 -
Amo08g2382 817 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 23 809 - -
Amo08g2382 817 CDD PH_ACAP 315 449 - -
Amo08g2382 817 ProSiteProfiles BAR domain profile. 23 258 IPR004148 GO:0005515|GO:0005737
Amo08g2382 817 SMART ANK_2a 729 758 IPR002110 GO:0005515
Amo08g2382 817 SMART ANK_2a 762 791 IPR002110 GO:0005515
Amo08g2382 817 PRINTS HIV Rev interacting protein signature 528 547 IPR001164 GO:0005096
Amo08g2382 817 PRINTS HIV Rev interacting protein signature 547 564 IPR001164 GO:0005096
Amo08g2382 817 PRINTS HIV Rev interacting protein signature 570 591 IPR001164 GO:0005096
Amo08g2382 817 SUPERFAMILY BAR/IMD domain-like 28 335 IPR027267 -
Amo08g2382 817 ProSiteProfiles PH domain profile. 312 445 IPR001849 -
Amo08g2382 817 Gene3D Arfaptin homology (AH) domain/BAR domain 26 272 IPR027267 -
Amo08g2382 817 ProSiteProfiles Ankyrin repeat region circular profile. 762 794 - -
Amo08g2382 817 MobiDBLite consensus disorder prediction 467 482 - -
Amo08g2382 817 ProSiteProfiles Ankyrin repeat profile. 729 761 IPR002110 GO:0005515
Amo08g2382 817 SUPERFAMILY PH domain-like 225 444 - -
Amo08g2382 817 Pfam Ankyrin repeats (3 copies) 734 811 IPR002110 GO:0005515
Amo08g2382 817 ProSiteProfiles Ankyrin repeat profile. 762 794 IPR002110 GO:0005515
Amo08g2382 817 SUPERFAMILY Ankyrin repeat 728 805 IPR036770 -
Amo08g2382 817 SMART 5bar 27 240 IPR004148 GO:0005515|GO:0005737
Amo08g2382 817 Gene3D - 707 814 IPR036770 -
Amo08g2382 817 Pfam PH domain 314 444 IPR001849 -
Amo08g2382 817 Pfam Putative GTPase activating protein for Arf 519 653 IPR001164 GO:0005096
Amo08g2382 817 SMART arf_gap_3 516 659 IPR001164 GO:0005096
Amo08g2382 817 CDD ArfGap 519 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2382 Amo-Chr8 37362665 37372391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2382 528 653 C2H2 Transcription Factor Family AT4G05330 41.732 6.75e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2382 K12489 - gmx:100797073 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3594 13 122330704 122336829 Amo08g2382 08 37362665 37372391 PCT
Amo03g2643 03 114669423 114675102 Amo08g2382 08 37362665 37372391 PCT
Amo08g2382 08 37362665 37372391 Amo13g3594 13 122330704 122336829 PCT
Amo08g2382 08 37362665 37372391 Amo03g2643 03 114669423 114675102 PCT