Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2375 ATGATGTCGTCGTCTTGGGCATCAATGGAAGCTGAGAGAGAACACCAACAACAAACCCACAACGACCATGATTTCACTTCCTTATGTTCTTTCAACAATAACTTGCCTTTCATGGAGGTTGATGATGTCAATGACATCATGATGATGATGACGATGATGAGAGACATGTCTAACTTCTTCCCTGAACCAGACACCACCAACAACAACAACCTCGTACTCCTTCATCATCACTCATCATCATCTTCTTCTTCTTCTTCTTCGTCATCACACCTTCAATGCTTTCTCCCTCCTCCTCCTCCACCAAACCCATTTGACATGCCTACCATGGCTTCCTTCCTTGACCCTCATCAAGCTTCCATAACCGCCACTACTGATTTTGGAGGTTTTCATCATCACAACTTGGAGGAACTAGGTTCTTGTTCTTCTTCTGGAAAGCCCGCACCACCACCACCACCACCACCACCACCACTGTTCTTCAACAGATCCAAGATTCTGAGGCCGCTTGATGATTCTCTACCTTCATCTGGAGCACAACCAACTCTGTTTCAGAAGAGAGCAGCACTCAGAAAAAACAACTCCTCATCACAACAACAACAACAAGGTGGTGTTCTTGGAGAAGGTGATAACAATAATAATAGTATGAAGAGAAAGGTGATGATGGAGATGGAAGATAATGGAAGCTTTGATGGGTCATCGGCATTCAACTATGATTCCGGCGATGACTTGATTGAAACCAATAACAAGAAGAATAATCAGAAAGGAGGTGGTGCCAAGAATAAGAAAGGGATGCCGGCCAAGAACTTGATGGCGGAGCGCCGTCGCCGGAAGAAGCTCAATGATAGGCTCTACATGCTCAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATATTAGGAGATGCAATTGAATATCTGAGGGAACTGCTGCAGAGAATCAATGAGCTTCATAATGAATTGGAATCATCACCATCAACAACAACAACTACTACTAATTCTGGAAGTAGTTCACTCATCACAGCAGTACCAACAGTAGTAGCCTCATCAAGCTTTTATCCATTGACACCAACTCCACCATCACTCCCAACCCGCATTAAAGAAGAGATTTGCCCCACTTCACTTCCTAGTCCCAATGCTCAACCTCCTAGGGTTGAGGTGAGGTTGAGAGAAGGAAGGGCAGTGAACATTCACATGTTTTGTGGTCGGAAAGCAGGGCTTCTGCTGTCAACAATGAGGGCATTGGACACACTTGGCTTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGTTTTGCTTTGGATATTTTCAGAGCTGAGCAATGCAAAGAAGGTCAAGATGTGCATCCAGAGCAAATCAAGGCAGTGCTCTTGGATACAGCTGGGTACCCTGCCATCATCTAA 1410 0.4475 MMSSSWASMEAEREHQQQTHNDHDFTSLCSFNNNLPFMEVDDVNDIMMMMTMMRDMSNFFPEPDTTNNNNLVLLHHHSSSSSSSSSSSSHLQCFLPPPPPPNPFDMPTMASFLDPHQASITATTDFGGFHHHNLEELGSCSSSGKPAPPPPPPPPPLFFNRSKILRPLDDSLPSSGAQPTLFQKRAALRKNNSSSQQQQQGGVLGEGDNNNNSMKRKVMMEMEDNGSFDGSSAFNYDSGDDLIETNNKKNNQKGGGAKNKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLRELLQRINELHNELESSPSTTTTTTNSGSSSLITAVPTVVASSSFYPLTPTPPSLPTRIKEEICPTSLPSPNAQPPRVEVRLREGRAVNIHMFCGRKAGLLLSTMRALDTLGLDIQQAVISCFNGFALDIFRAEQCKEGQDVHPEQIKAVLLDTAGYPAII* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2375 469 MobiDBLite consensus disorder prediction 76 92 - -
Amo08g2375 469 Coils Coil 301 325 - -
Amo08g2375 469 MobiDBLite consensus disorder prediction 144 160 - -
Amo08g2375 469 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 93 466 - -
Amo08g2375 469 Gene3D - 257 326 IPR036638 GO:0046983
Amo08g2375 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
Amo08g2375 469 MobiDBLite consensus disorder prediction 135 161 - -
Amo08g2375 469 Pfam Helix-loop-helix DNA-binding domain 269 311 IPR011598 GO:0046983
Amo08g2375 469 PANTHER BHLH TRANSCRIPTIONAL FACTOR 93 466 - -
Amo08g2375 469 SMART finulus 268 317 IPR011598 GO:0046983
Amo08g2375 469 MobiDBLite consensus disorder prediction 1 21 - -
Amo08g2375 469 CDD ACT_UUR-ACR-like 398 458 - -
Amo08g2375 469 MobiDBLite consensus disorder prediction 239 264 - -
Amo08g2375 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 325 IPR036638 GO:0046983
Amo08g2375 469 MobiDBLite consensus disorder prediction 187 212 - -
Amo08g2375 469 MobiDBLite consensus disorder prediction 76 106 - -
Amo08g2375 469 CDD bHLH_AtAMS_like 265 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2375 Amo-Chr8 37260113 37265261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2375 160 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 60.900 6.70e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g2375 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2375 - - vra:106778861 383.645