Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2374 ATGGCATCATCGGAGGCAGCAACAACCATCAAGGTTAATGGTAATTCTCACAACAATAACAACAACAACAACATCATCAACAACAACTCTTCGGAGCTGAACAACAATGTTCATTCTTCATCTTCTTCCTCCACCTCACCCAAAGACGCGGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTTACAGTTCCAAGAGAAGGAGAAAGAGTTTTCTATTTCCCTCAGGGACACATAGAACAGGTGGAGGCGTCAACAAATCAGGTGGCTGACCAACACATGCCTGTGTACGATCTTCCTTCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTCAAGGCGGAGCCCGACACGGATGAGGTGTTTGCCCAGATTACCTTGCTTCCGGAACAAAATCAAGATGAGAYTGCGGTCGAGAAAGAYCCTCCACTGCCACCACCACCGCGCTTCCATGTACATTCYTTCTGTAAGACGCTGACCGCATCTGATACAAGCACCCARGGTGGGTTTTCCGTTCTGAGGCGACATGCTGACGAGTGCCTTCCTCCCCTGGATATGTCAAAGCAGCCGCCTACCCAGGAATTGGTGGCGAAGGATTTGCATGCGAATGAATGGCGATTTAGGCACATATTCCGAGGTCAACCTCGGAGGCACTTGCTTCAAAGTGGCTGGAGTGTTTTTGTTAGCTCCAAGAGGCTAGTTGCTGGGGATGCCTTCATATTCTTAAGAGGTGAGAATGGGGAGCTTCGTGTGGGCGTACGGAGAGCGATGAGACAGCAGGGGAATGTCCCATCCTCGGTTATTTCTAGCCACAGTATGCATCTTGGGGTTCTTGCAACTGCTTGGCATGCCATCTTGACAGGAACCATATTCACTGTTTATTATAAACCGAGGACTAGTCCTGCTGAGTTCATTGTTCCATACGACCAATATATGGAATCTCTAAAGAATAATTACACCATAGGAATGCGGTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAACAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGCTGACTCAAAAAGGTGGCCTGAATCAAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATTCCCCGTCCAGAGAGGGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTGAACCCTCTTTCAATGCCCAGGGCTAAAAGGCCTCGATCTAATGTACCTAATGTACCAATTCAATCATCCCAAGATTCTTCTGTTCTAACTCGAGAAGCATCGTCTAAAGTAAGCGCAGACCCTTCACCAGCAAATGGATTCCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGTGGCAATTTCGCAGAAAGTAACGAGTCCGACACAGCTGAGAAATCTGTTGTTTGGCCACCTGTAGATGATGAGAAAGTTGATGTTGTTTCAATGTCACGGAGGTACGGTTCAGAGAACTGGATGTCAATGGGAAGGCCTGACACGTCCTATTCAGATCTTCTTTCAGGCTTTGGGGCCAGCGGAGATCCTTCCCATCCATCCTTGGGAGATCAAATGGGTGGACCTGTAGCCTATTCTGCCAGAAAGCATGTGTTAGATCACGAAGGCAAACTTAATGTGCATCATCCTTGGCCAGCGATGTCCTCAGGTTTTTCACTAAACCTCTTGGAGCCTAGTACAAAAGAATCTCCACGTGGCAGCGAAACACCTTACCAAGCTCGAGGGAATTTGAGGTACGGCCCATTCAGTGAATATCCGGTCATTCATATTAACAAAGTTGAGCATCCACATGGAAAGTTGATGCTGCCACCACCCCCAACTCAATACGAGAGTCCTTGTTCAAGAGACCTTATGTCCAAACCAATGTCAGCGAAAACATATGAGACGGCGAAACCAAAAGAAGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCCCTACTGCTGCACCGGAGCCTTCTGTATCACATGGAAGTGGAACGACTGAGCCAGCTGGTCAAGCACATCTCAAATCACACCACCAACGCACTTCTGAAAATGATCAGAAAACAGAACAATCAAAGGGCTTGAAATCGGCAGATGGTCAAGTTATTGTTGATGACCATGACAAGCCATCAAAAACTTCCCAGGTGCATCTTAAAGATGGTCAGGCCAAACCACCAAGCAGCTCAGCTAGGAGTTGCACTAAGGTCCACAAGAAGGGGATTGCGCTTGGTAGGTCTGTGGATCTGACAAAGTACAGCAACTATGATGAATTGGTTGCTGAATTGGATCAGCTGTTTGAATTTGGAGGTGAATTAATGTCAACAAGAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTCGTRGGGGACGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTACCCGAAAGAGGAGATTCAAAAGATGAGCCCAGGTACCTTAAGTTCAAGAAATGAAGAGAATCATTCAGCTAGTGAAGGAACRGAGGCAAAAGAAGTCAAAAGTCAGCTGCACCAGAAGTTAAATTCAGAAAGTGTGGCTARGGTCCACGATAATTAG 2607 0.4676 MASSEAATTIKVNGNSHNNNNNNNIINNNSSELNNNVHSSSSSSTSPKDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQITLLPEQNQDEXAVEKDPPLPPPPRFHVHSFCKTLTASDTSTQGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLSMPRAKRPRSNVPNVPIQSSQDSSVLTREASSKVSADPSPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPVDDEKVDVVSMSRRYGSENWMSMGRPDTSYSDLLSGFGASGDPSHPSLGDQMGGPVAYSARKHVLDHEGKLNVHHPWPAMSSGFSLNLLEPSTKESPRGSETPYQARGNLRYGPFSEYPVIHINKVEHPHGKLMLPPPPTQYESPCSRDLMSKPMSAKTYETAKPKEGDCKLFGISLISSPTAAPEPSVSHGSGTTEPAGQAHLKSHHQRTSENDQKTEQSKGLKSADGQVIVDDHDKPSKTSQVHLKDGQAKPPSSSARSCTKVHKKGIALGRSVDLTKYSNYDELVAELDQLFEFGGELMSTRKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEENHSASEGTEAKEVKSQLHQKLNSESVAXVHDN* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2374 868 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo08g2374 868 SUPERFAMILY CAD & PB1 domains 738 814 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 826 868 - -
Amo08g2374 868 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Amo08g2374 868 MobiDBLite consensus disorder prediction 1 48 - -
Amo08g2374 868 Gene3D - 323 393 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 608 639 - -
Amo08g2374 868 PANTHER AUXIN RESPONSE FACTOR 2 40 844 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 412 438 - -
Amo08g2374 868 Pfam AUX/IAA family 721 773 IPR033389 -
Amo08g2374 868 Pfam AUX/IAA family 782 824 IPR033389 -
Amo08g2374 868 MobiDBLite consensus disorder prediction 511 532 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 722 738 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 658 679 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 565 585 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 658 738 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 565 580 - -
Amo08g2374 868 MobiDBLite consensus disorder prediction 680 699 - -
Amo08g2374 868 Gene3D - 157 262 IPR015300 -
Amo08g2374 868 SUPERFAMILY DNA-binding pseudobarrel domain 156 289 IPR015300 -
Amo08g2374 868 MobiDBLite consensus disorder prediction 394 450 - -
Amo08g2374 868 Gene3D - 733 826 - -
Amo08g2374 868 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 844 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo08g2374 868 CDD B3_DNA 158 260 IPR003340 GO:0003677
Amo08g2374 868 MobiDBLite consensus disorder prediction 706 721 - -
Amo08g2374 868 SMART B3_2 160 262 IPR003340 GO:0003677
Amo08g2374 868 MobiDBLite consensus disorder prediction 838 854 - -
Amo08g2374 868 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
Amo08g2374 868 ProSiteProfiles PB1 domain profile. 737 819 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2374 Amo-Chr8 37253007 37258957 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2374 1 859 B3 DNA Binding Superfamily AT5G62000 62.614 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo08g2374 AUX_IAA 2.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2374 - - aip:107612759 1680.61