Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2366 ATGCCTTTTGAAGTAATGAACCAGAGGGGCGTTTCGACCTCGTCTCACTTTTACGACGACATCTCCTTTCCTCCAGAGAAGAATCCTGGATTACGGAAGCAAAAATCTATTCACGAGCGATACCCGCAAGGAAAGAGTGAGATCACAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCGTGGAATGAATGCAAAAACAGGCTTGCCGATGTCGCAGACTGGTTTATCTTCCGAAGGCACAGGAAGCACACGTTTCGGTGGTAAAGAAGGCATTGCAGATGTGCTGAAGGATTCCAAGGAGTTACTTAACTATCATCCAAGATCATGGACTGATGTGCGTATGCAGCCGGCATCTAGCTCGTATGGTTTCATTGGGAACAAGATTGTCGCCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCAAGTTCATTGTCTGATATGTTTACTCAAAAGTTGAGATTAATGGGGAATGATGTTTTCCGGGATCAGTCTGTTTCCGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTCAAGAAATTGAGGCTGACACTATTGGGAATCTTCTTCCTGATGAGGATGACCTGTTTTCTGGTGTTGCTGATGAGTTAGGATCCAATGTTCATGCCAAAGCAAATGATGATTTCGAAGATTTTGATTTGTTTAGCAGTGGGGGAGGCATGGAGTTAGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAGCCAGCGGCTTAGAAGGAGATCTTGGTTATTTCGGAGGTTCCAAAGGAAAAATTCCTTTTGGTGACCAATCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGATGACTCTGAGCTGAAGACTCTCTTCGAGCAATATGGAGATATCCGAACCATGTATACCGCTTGCAAGCCTCGCGGTTTTGTCATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTCCAACATAAGTCGTTGAGATCTCGAAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTGGTCATGGTGGTGTGATGATATCTGGTCTTGATTCATCTGTTTCAAATGAGGAACTTAAGCATATTTTCGCATTATATGGAGAAATTAAAGAAATATATGAATCTCCTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCAGAAGCTTCTCTTGGTGCTTCGAACAGGATCTGCATTCCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCATAGAAATGCTATTCTAATGCAGCAGTCTCAAAAGGGACAAGAAGAACCAGATTTTGTTCATAATCTTAGTGATAACTTATTAAGACAGAACGCAACATCTTCTGGAGCAGCCACATCTGGTGGCAGCTTGGAGAGTGGATATAATCAGGGGTTTCAATCTGCAAAAAGGATACCTCTGAATGGTTTTGTTGATAATGCATTATATCCTGTGGGTTCTAGCATACCAAAGATGGCAAGAGGGGCTTCTGGTGGAAAAGTATCCGGAGTTTACGAGTCTGCAAATGTTGTTGATGCAATGAAACTGGGATCTATTACAAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATGGTTTAGCTAGTGGTAGTCCCTACAACTTTTCAAACCCCATCAGCAATGTTGCTGCCAGTATTGGAACTGGATCGACAGAATTGTCGGACAGCAGGCATATTCAGGGGATTGGCTCACCTGGCAACCTAGCTGAATTTAATGCAGTAGTTTCAGGAAACGGGAGCCGCCCGCCTCAGGGACTTTATCATATGTGGAACAACTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCATAAAACACCACCATCCTTTATTAATGGTGCTGGTGCTCCTGGTGTTCCGCAGATGCCCGGCTTTCCTAGAACACCACCTCATGTGCTGAGATCATCACAGATAGACCATCATGTCGGATCAGCACCGGTCGTTACTGCCTCACCCTGGGAAAGACAGCCTTCTTACTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCGAATGGGATCTTTAGGAAGTACAGGTTTTCATGGTTCTTGGCAGATGCATCCTCCGGACTTGTCTTCTCGCAACATGTTTTCTCATGTGGGTGGGAACAGTACAGAATTGTCATCCAGTGCTGGGCAGGGATCTCCTAAGTTGTCACATTTTTTCCCAGGGAGACTTCCCATGAATTCAATGCTGAAGTTTGATTCGGCCAATGAACGGATGAGAAGCCTCTATCATCGTAGAAGTGAAGCAAATACTAACAGTGCTGATAAAAAGCAATATGAGCTTGATCTAGGCCGCATATTGCGCGGGGAAGATAACCGAACCACACTTATGATAAAAAATATTCCAAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAACATGATTGACCCTGGTCAAATTATTCAGTTCCATCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGTCGCCCCATTCTCTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGAAACAATATTCGAACAAGGCCAGGAAAATCTCGTACGAGTGCTAACGATGAGAATCGCAACCAAGGGAGTTCTTCAGCTGCAGCCGGAGATGAATCTGCTAATGGAGTAGAGTCGTCCTTGAGTTCATCGAAAACCTGA 2913 0.4346 MPFEVMNQRGVSTSSHFYDDISFPPEKNPGLRKQKSIHERYPQGKSEITASPGSILNASSPRGMNAKTGLPMSQTGLSSEGTGSTRFGGKEGIADVLKDSKELLNYHPRSWTDVRMQPASSSYGFIGNKIVANAASRESSLFSSSLSDMFTQKLRLMGNDVFRDQSVSVGSLPEEEPYKSLQEIEADTIGNLLPDEDDLFSGVADELGSNVHAKANDDFEDFDLFSSGGGMELEGDEHLVSGKRASGLEGDLGYFGGSKGKIPFGDQSSRTLFVRNINSNVDDSELKTLFEQYGDIRTMYTACKPRGFVMISYYDIRAAQNAMKALQHKSLRSRKLDIHYSIPKGNAPEKDIGHGGVMISGLDSSVSNEELKHIFALYGEIKEIYESPEVNHVKFIEFYDVRAAEASLGASNRICIPGKQIKLEPGHHRNAILMQQSQKGQEEPDFVHNLSDNLLRQNATSSGAATSGGSLESGYNQGFQSAKRIPLNGFVDNALYPVGSSIPKMARGASGGKVSGVYESANVVDAMKLGSITRFHPHSLPEFHDGLASGSPYNFSNPISNVAASIGTGSTELSDSRHIQGIGSPGNLAEFNAVVSGNGSRPPQGLYHMWNNSNLHQQPPSNAMLWHKTPPSFINGAGAPGVPQMPGFPRTPPHVLRSSQIDHHVGSAPVVTASPWERQPSYLGESPEASSFRMGSLGSTGFHGSWQMHPPDLSSRNMFSHVGGNSTELSSSAGQGSPKLSHFFPGRLPMNSMLKFDSANERMRSLYHRRSEANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIQFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRTSANDENRNQGSSSAAAGDESANGVESSLSSSKT* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2366 970 Pfam RNA recognition motif 2 797 893 IPR007201 -
Amo08g2366 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 969 - -
Amo08g2366 970 SMART rrm1_1 356 424 IPR000504 GO:0003723
Amo08g2366 970 SMART rrm1_1 799 877 IPR000504 GO:0003723
Amo08g2366 970 SMART rrm1_1 271 339 IPR000504 GO:0003723
Amo08g2366 970 Gene3D - 355 448 IPR012677 -
Amo08g2366 970 CDD RRM3_MEI2_like 800 885 IPR034454 -
Amo08g2366 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Amo08g2366 970 CDD RRM1_MEI2_like 269 344 IPR034453 -
Amo08g2366 970 MobiDBLite consensus disorder prediction 1 56 - -
Amo08g2366 970 MobiDBLite consensus disorder prediction 930 970 - -
Amo08g2366 970 SUPERFAMILY RNA-binding domain, RBD 267 426 IPR035979 GO:0003676
Amo08g2366 970 Gene3D - 256 352 IPR012677 -
Amo08g2366 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Amo08g2366 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Amo08g2366 970 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 969 - -
Amo08g2366 970 MobiDBLite consensus disorder prediction 908 970 - -
Amo08g2366 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Amo08g2366 970 SUPERFAMILY RNA-binding domain, RBD 799 884 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2366 Amo-Chr8 37058161 37065388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2366 267 454 Eukaryotic Initiation Factors Gene Family AT1G49760 23.000 4.32e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2366 - - aip:107612925 1670.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3607 13 122623341 122626986 Amo08g2366 08 37058161 37065388 PCT
Amo03g2655 03 114936754 114944738 Amo08g2366 08 37058161 37065388 PCT
Amo08g2366 08 37058161 37065388 Amo13g3607 13 122623341 122626986 PCT
Amo08g2366 08 37058161 37065388 Amo03g2655 03 114936754 114944738 PCT