Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2361 ATAGATAATAAATTGATTATTAAGGTGGATCCAAGGCATGGAAAGAGGTCACTTTCATTGGAAGAAGCACAAAAGGAGGAAGAAGAACATCATGAACACTTGTTCCCAATTTATTCTGAAAGATCTCAACAAGACATGTCGGCTATGGTTTCTGTCCTCACACAAGTCATGGGAGGAGGCATCCCAAATGACCCTTTAACCCCTTCTCATCAATCTACTAATCACAATGATCAACAATCTCAACCACCATCACAAGATCAAGGGAACATAAGAAGAAGACATTATAGAGGGGTGAGACAAAGGCCATGGGGGAAATGGGCGGCGGAGATTCGAGATCCACAAAAGGCGGCTAGGGTTTGGCTTGGAACTTTTGAAACTGCCGAGGCGGCTGCACTCGCATATGACGAGGCAGCCCTTAGATTCAAAGGAAGCAAAGCTAAACTCAATTTTCCTGAAAGAGTTCAAGGAACTGGCGAATTTGGTAATTATCTCACGAATTTTCAACAAAATAATAGTCACCATCAGATTCAATATCAGAATACAACAACTCAACAAAGTGTTCAATATCCATCACAAGGAATAATGGCAAGTGACGGTGGATTCGATTATAATCAACAGAACATGTATTTTGTTCCGTCTCATTATCAACACTATTCATCATCTTCTTCTTCATCTTCCGAACCACCACATCAACATTATAACCAACAACAAGAACTTATGAGATCATATTCATTGCAATATGGGGGTTCTTCTTCTTCTAGTGATCATCATTATCATCATCAGCAATATCCTCCTAAGAATTGGAATGATGATGACATGGATGGTAGACAATAA 834 0.3969 IDNKLIIKVDPRHGKRSLSLEEAQKEEEEHHEHLFPIYSERSQQDMSAMVSVLTQVMGGGIPNDPLTPSHQSTNHNDQQSQPPSQDQGNIRRRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGNYLTNFQQNNSHHQIQYQNTTTQQSVQYPSQGIMASDGGFDYNQQNMYFVPSHYQHYSSSSSSSSEPPHQHYNQQQELMRSYSLQYGGSSSSSDHHYHHQQYPPKNWNDDDMDGRQ* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2361 277 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Amo08g2361 277 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Amo08g2361 277 CDD AP2 94 152 IPR001471 GO:0003700|GO:0006355
Amo08g2361 277 MobiDBLite consensus disorder prediction 216 258 - -
Amo08g2361 277 PANTHER DNA-BINDING DOMAIN 27 257 IPR044808 GO:0003700|GO:0009873
Amo08g2361 277 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Amo08g2361 277 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Amo08g2361 277 MobiDBLite consensus disorder prediction 57 99 - -
Amo08g2361 277 MobiDBLite consensus disorder prediction 1 33 - -
Amo08g2361 277 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 257 - -
Amo08g2361 277 MobiDBLite consensus disorder prediction 65 88 - -
Amo08g2361 277 MobiDBLite consensus disorder prediction 216 277 - -
Amo08g2361 277 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Amo08g2361 277 MobiDBLite consensus disorder prediction 259 277 - -
Amo08g2361 277 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Amo08g2361 277 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2361 Amo-Chr8 37016804 37019067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2361 33 155 AP2-EREBP Transcription Factor Family AT5G61890 67.939 8.78e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo08g2361 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2361 - - ahf:112773083 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3619 13 122895989 122896778 Amo08g2361 08 37016804 37019067 PCT
Amo03g2663 03 115065321 115067730 Amo08g2361 08 37016804 37019067 PCT
Amo08g2361 08 37016804 37019067 Amo13g3619 13 122895989 122896778 PCT
Amo08g2361 08 37016804 37019067 Amo03g2663 03 115065321 115067730 PCT