Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2340 ATGTCGCTGTTCAAAAAGTTCTTCTACCGGCAGCCGCCGGATCGACTCCTTGAGGTCTCCGAGAGGGTCTTTGAAGCGTACAAAGATTATATAGGGGGAATAGTAGCAGATCTACAATATCTGTTTCCAGATGCTTCAATCATGGTATTCAATTTCAGAGAAGGGGGAACGCGGAGCCAGATATCAGATATGTTGGCACAATTTGACATGACGGTTATGGAGTACCCTCAGCAATATGAGGGTTGTCCATTACTCCCTCTGGAGATGGTGCACCATTTCCTCCGATCAAGTGAAAGCTGGTTGTCTGTGGAGGGGCAGCAAAACGTGGTGTTATTTCATTGCGAAAGGGGGGGTTGGCCTGTCTTGGCGTTCATGCTAGCAGGTCTTCAATTGTACAGGAAGTGGTATACAGCGGAGTTGAGGAGTCTTGAAATGCTGTACAAGCTAGCATCTAAAGAACTCTTGCAACTCGCATCTCCTTTGAATCCCCAACCTTCTCAGTTGAGATATCTCCAGTATGTTTCCAGAATTTTGGGTTCTGAGTGGTCTCCACAAGAAACACCCTTGCTTTTGTACTGTTTGATCCTCAGAGACCTTCCATTGTTTGGTGGTGGAGAAGGTTGCAGGCCAATTGTTCGTGTCTATGGTCCAGACCCTACAAGACCTGCCAATAGTAGCTCTAACATTCTTTTCCAAACTCCAGGTTCCCTCATTCGACACTACCCGCAGGCAGAATGTAGGCTCGTGGGAATTGATATCTATTGTTGTGTTCAAGGGGATGTTGTTCTTGAATGCATACATTTGAGTGAAGATTTAGTTCACGAGGAAATTATGTTTAGAATAATGTTTCATACTGCATTTGTTCACTCAAACATATTGATCTTGAGTCGTGACGATATTGATGTTGCGTGGGATTCAAAGGAGCAGTTTCCCAAGGACTTTAGAGCAGAGGTGCTTTTCTTGGACGTTTATGATCTTGTACATAATCTATCCAACGTAAGCCGAGATACAAGTGACACTGAAAGTGATTCACCAGATGAGTTCTATGAAGTGGAAGAGATCTTTACGAATGAAGATTGTTCAGATCCTCTTACTTCTCAAGACTCTACTTCAGATGATGGGAGTCACCAACAGGAAGTTGGAAAGGTAGAATCTTGTATTAACACAGTTAAAGATATTGCTGTTGATGATGTCAAATACAAGTTTCAAAGGATGACAGATTTGGATCCTCATGAGATTAAAGACATTGTTGTCGATGAAGTGGAGATTAAGTCGAATTCAATTGCAGACAATATGGATTTGCAAGATGAGGAGGTGACAATTATTATGCACAAGAATTTTGATGAAGGGGAGGAAAAGCATGATCTTTCTATGTCACATTCTGTTCATAAACTACATTCATCAGTTAGTGACCCACCTCTCGAGTCAACCACAACTTACTTCAAATCCAATGCTTCTGCCAGTACCTCCTCCACCCCCACCCGCACCTCCACCTCTATCTAG 1503 0.4298 MSLFKKFFYRQPPDRLLEVSERVFEAYKDYIGGIVADLQYLFPDASIMVFNFREGGTRSQISDMLAQFDMTVMEYPQQYEGCPLLPLEMVHHFLRSSESWLSVEGQQNVVLFHCERGGWPVLAFMLAGLQLYRKWYTAELRSLEMLYKLASKELLQLASPLNPQPSQLRYLQYVSRILGSEWSPQETPLLLYCLILRDLPLFGGGEGCRPIVRVYGPDPTRPANSSSNILFQTPGSLIRHYPQAECRLVGIDIYCCVQGDVVLECIHLSEDLVHEEIMFRIMFHTAFVHSNILILSRDDIDVAWDSKEQFPKDFRAEVLFLDVYDLVHNLSNVSRDTSDTESDSPDEFYEVEEIFTNEDCSDPLTSQDSTSDDGSHQQEVGKVESCINTVKDIAVDDVKYKFQRMTDLDPHEIKDIVVDEVEIKSNSIADNMDLQDEEVTIIMHKNFDEGEEKHDLSMSHSVHKLHSSVSDPPLESTTTYFKSNASASTSSTPTRTSTSI* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2340 500 MobiDBLite consensus disorder prediction 462 500 - -
Amo08g2340 500 Gene3D Protein tyrosine phosphatase superfamily 16 190 IPR029021 -
Amo08g2340 500 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 185 320 IPR035892 -
Amo08g2340 500 ProSiteProfiles C2 tensin-type domain profile. 186 323 IPR014020 -
Amo08g2340 500 Gene3D - 191 320 - -
Amo08g2340 500 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 38 178 IPR029021 -
Amo08g2340 500 SMART PTEN_C2_2 184 322 IPR014020 -
Amo08g2340 500 Pfam C2 domain of PTEN tumour-suppressor protein 185 320 IPR014020 -
Amo08g2340 500 PANTHER FORMIN-J 1 475 - -
Amo08g2340 500 MobiDBLite consensus disorder prediction 359 382 - -
Amo08g2340 500 MobiDBLite consensus disorder prediction 460 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2340 Amo-Chr8 36750084 36752880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2340 1 433 FH2 protein (formin) Gene Family AT5G07740 58.606 1.12e-162 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2340 - - adu:107463172 884.789