Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo08g2336 | ATGGAATTGTGGAACGTGATGGACCTGCCTGTCTTCGACATGGGTGATGATCAACTGCCTGAGTTTCAATATCTGCCTCCATTGACAGACGCAGAGCTGTTTGCCGCAGACGTGGGAGCACCTCAGTTTCAGTCGCCCTCATCCTCAAATGTGCCTCTTCCGGAGTTTCCAATTGGCAATCAACAGCCTCTGCCTCAGCCTCTGCCTCTGCCGGAATTTGCAGCCAATGTGCCTCCGCCGCAGTTTGCCGCTGACATGTGTGGCTATCAACAACCTCAGGCACAGCCTGAGACACCTCAGCCTCAGCTTCCGGCAGAGTTTCCCGTCAATTTGCCTCTGCCGGAGTTTCCCGCTTATGTGCCTCTGCCGCAGTCTGCCGCTGACGTGTGTGGCTATCAACAACCTCAGGCACAGCCTGAGCCCTTCTGGAGTGAGGATGACAACAAAGAGTTTGAATTGGTTCTTGCTGAATGTCTTCCGGAAGCTCTAAAGAACCGGTGGGATGATGTGGCTGCTTGTCTCCCCGGCAAGACCCCCGCGCAGATACAGGAACGCTTCCAGAAGCTCATCACCGACATCAATCTCATCCATAACTCTTATATCAATCTGCATCACACCTCCATTGCACCTGCTGCACCTCACAACATGCCTGCACCTCCCACCACATTGGAACGCAATCCACTCTCCCTCCCCGGAACAAGTGAACAAAACCAACCTGCTATGACTAGTGAAAGAAAGAAAACAGTTCATTGGACTCCAGAAGAGAAAGAGTTATTTCTTAGAGGATATAAAGAATTAGGACGCAAGTGGAAAAGAATTTCGGAAGATTATGTCAAAACAAAAACGGAAAAACAAGTTGTTAGTCATGCACAAAAAGTTCTGAAAAAATTAGCTGAACAAAACAGAAGAAATAACATTGGTGATGAATCATAG | 933 | 0.4887 | MELWNVMDLPVFDMGDDQLPEFQYLPPLTDAELFAADVGAPQFQSPSSSNVPLPEFPIGNQQPLPQPLPLPEFAANVPPPQFAADMCGYQQPQAQPETPQPQLPAEFPVNLPLPEFPAYVPLPQSAADVCGYQQPQAQPEPFWSEDDNKEFELVLAECLPEALKNRWDDVAACLPGKTPAQIQERFQKLITDINLIHNSYINLHHTSIAPAAPHNMPAPPTTLERNPLSLPGTSEQNQPAMTSERKKTVHWTPEEKELFLRGYKELGRKWKRISEDYVKTKTEKQVVSHAQKVLKKLAEQNRRNNIGDES* | 311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo08g2336 | 310 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 246 | 293 | IPR006447 | GO:0003677 | |
| Amo08g2336 | 310 | ProSiteProfiles | SANT domain profile. | 251 | 299 | IPR017884 | - | |
| Amo08g2336 | 310 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
| Amo08g2336 | 310 | Pfam | Myb-like DNA-binding domain | 143 | 189 | IPR001005 | - | |
| Amo08g2336 | 310 | Pfam | Myb-like DNA-binding domain | 249 | 294 | IPR001005 | - | |
| Amo08g2336 | 310 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 243 | 298 | IPR017930 | - | |
| Amo08g2336 | 310 | CDD | SANT | 251 | 294 | IPR001005 | - | |
| Amo08g2336 | 310 | SUPERFAMILY | Homeodomain-like | 244 | 297 | IPR009057 | - | |
| Amo08g2336 | 310 | ProSiteProfiles | Myb-like domain profile. | 143 | 190 | IPR001005 | - | |
| Amo08g2336 | 310 | SUPERFAMILY | Homeodomain-like | 141 | 190 | IPR009057 | - | |
| Amo08g2336 | 310 | SMART | sant | 139 | 192 | IPR001005 | - | |
| Amo08g2336 | 310 | SMART | sant | 247 | 296 | IPR001005 | - | |
| Amo08g2336 | 310 | MobiDBLite | consensus disorder prediction | 211 | 249 | - | - | |
| Amo08g2336 | 310 | ProSiteProfiles | Myb-like domain profile. | 243 | 294 | IPR001005 | - | |
| Amo08g2336 | 310 | Gene3D | - | 136 | 202 | - | - | |
| Amo08g2336 | 310 | CDD | SANT | 143 | 190 | IPR001005 | - | |
| Amo08g2336 | 310 | Gene3D | - | 250 | 297 | - | - | |
| Amo08g2336 | 310 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 143 | 306 | IPR043363 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo08g2336 | Amo-Chr8 | 36714217 | 36717452 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Amo08g2336 | Myb_DNA-binding | 1.3e-06 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo08g2336 | - | - | aip:110265393 | 588.186 |