Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2329 ATGAGTGAAGAAGAATTTGATCCTTTCTCAATTATGAAACTGTTGGAGGTGCCTCTTCCGGACGCAGAGCTGTTTGCCGCAGACGTGGGACCATCTCAGTTTCAGTCGCCCTCATCTTCCAATGTGCCTCTTCCTGAGTTTCCAATTGGCAATCAACAGCCTCAGCCTCTGCCTCTGCCTCTGCCTCTGTCTCTGCCTCTGCCTCAGGCTCTGCCTCTACCGGAGTTTGCAGCCAATGTGCCTCGACCGCAGTTTGCCGTTGACCTGTGTGGCTATCAACAACCTCAGGCACAGCCTGAGACACCTCAGCCTCAGCTTTTTCCCGTCAATGTGCCTCTGCATGAGTTTGCCGCTGACGTGTGTGGCTATCAACAACCTCAGGCACAGCCTGAGCCCGTCTGGAGTGAGGATGAGAACAAACAGTTTGAAATAATTATTGCTGAATGTCTTCCGGAAGAAATGCAGAACCGGTGGGAGGCTGTGGCTGCTTGTCTCCCCGGGAAGACCCCCGAGCAGATACAGGAACGCTTCCAGGAGCTCCTCACCGACATCAATCTCATCCATAAATATTATATCAATCTGCATCACACCTCCATCGCACCTGCTGCACCTCCCACCACATTGGAACGCAATCCACTCTCCCTCCCCGGAACAAGTGAACAAAACCAACCTGCCAACACCAACATAATCGAACACCAACCTTTAACTAAGACTACTGAAAGAAAGAAAACAGTTCATTGGACTCAACAAGAGAAAGAGTTATTTCTTAGAGGATATAAAGAATTAGGACGCAAGTGGAAAAGAATTTCTGAAGATTATGTCAAAACAAGAACGGAAAAACAAGTTATTAGCCATGCACAAAAAGTTCTGAAAAAATTAGATGGACAGAAGAAATAA 897 0.4771 MSEEEFDPFSIMKLLEVPLPDAELFAADVGPSQFQSPSSSNVPLPEFPIGNQQPQPLPLPLPLSLPLPQALPLPEFAANVPRPQFAVDLCGYQQPQAQPETPQPQLFPVNVPLHEFAADVCGYQQPQAQPEPVWSEDENKQFEIIIAECLPEEMQNRWEAVAACLPGKTPEQIQERFQELLTDINLIHKYYINLHHTSIAPAAPPTTLERNPLSLPGTSEQNQPANTNIIEHQPLTKTTERKKTVHWTQQEKELFLRGYKELGRKWKRISEDYVKTRTEKQVISHAQKVLKKLDGQKK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2329 298 Pfam Myb-like DNA-binding domain 133 181 IPR001005 -
Amo08g2329 298 Pfam Myb-like DNA-binding domain 245 290 IPR001005 -
Amo08g2329 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 289 IPR006447 GO:0003677
Amo08g2329 298 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 133 295 IPR043363 -
Amo08g2329 298 Coils Coil 283 298 - -
Amo08g2329 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 294 IPR017930 -
Amo08g2329 298 CDD SANT 247 290 IPR001005 -
Amo08g2329 298 Gene3D - 246 293 - -
Amo08g2329 298 Gene3D - 127 193 - -
Amo08g2329 298 ProSiteProfiles Myb-like domain profile. 239 290 IPR001005 -
Amo08g2329 298 CDD SANT 134 181 IPR001005 -
Amo08g2329 298 ProSiteProfiles SANT domain profile. 247 295 IPR017884 -
Amo08g2329 298 ProSiteProfiles Myb-like domain profile. 134 181 IPR001005 -
Amo08g2329 298 SUPERFAMILY Homeodomain-like 131 182 IPR009057 -
Amo08g2329 298 SUPERFAMILY Homeodomain-like 239 293 IPR009057 -
Amo08g2329 298 SMART sant 130 183 IPR001005 -
Amo08g2329 298 SMART sant 243 292 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2329 Amo-Chr8 36641351 36643998 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g2329 Myb_DNA-binding 5.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2329 - - aip:110265393 404.06