Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2230 ATGAGTGAAGAAGAATTTGATCCTTTCTCAATTATGAAACTGTTGGAGGTGCCTCTTCCGGACGCAGAGCTGTTTGCCGCAGACGTGGGATCATCTCAGTTTCAGTCGCCCTCATCCTCCAATTTTCCAGCCAATTTGCCTCAGCCGCAGTTTGCCGTTGACCTGTGTGGCTATCAACAACCTCAGGCACAGCCTGAGACAGTATGGAGTGGGGATGAGAACAAAGAGTTCGACATGGGAGCACCTCAGTTTCAGTGGCCCTCTGAGTTTCAGTCTCTGCCTCTGCATCATCCGGTCTGGACTGGGGACGAAAACCACCTTCTTGCCGCCAATGTGGGTGGTAATCAACAGCCTCAGCCTCAGCTTCCGCTTCCGTCGCAGCTTGCCACCGATGTGCCTCTGCTGCAGTTTGCCGCCAATGTCGGTGGTAACCAACAGCCTCAGTTGCAGCTTCCGCCTCTGCATGAGTTTCCCGCTGACGTGTGTGGCTATCAACAACCTCAGGCACAGCCTGAGCCCGTCTGGAGTGAGGATGAGAACAAACAGTTTGAAATAATTATTGCTGAATGTCTTCCGGAAGAAATGCAGAACCGGTGGGAGGCTGTGGCTGCTTGTCTCCCCGGGAAGACCCCCGAGCAGATACAGGAACGCTTCCAGAAGAACATCAATCTCATCCATAAATCTTATAGCAATCTGCATCACACCTCCATCGCACCTGCTGCACCTCCCACCACATTGGAACGCAATCCACCCTCCCTCCCCGGAACAAGTGAACAAAACCAACCTGCCAACACCAACATAATCGAACACCAACCTTTAACTATGACTAGTGAAAGAAAGAAAACAGTTCATTGGACTCAACAAGAGAAAGAGTTATTTCTTAGAGGATATAAAGAATTAGGACGCAAGTGGAAAAGAATTTCAGAAGATTATGTCAAAACAAGAACGGAAAAACAAGTTATTAGCCATGCACAAAAAGTTCTGAAAAAATTAGGTAAAACAAACAGAAAAAATAACATTCGTGATGAATCATAG 1035 0.4792 MSEEEFDPFSIMKLLEVPLPDAELFAADVGSSQFQSPSSSNFPANLPQPQFAVDLCGYQQPQAQPETVWSGDENKEFDMGAPQFQWPSEFQSLPLHHPVWTGDENHLLAANVGGNQQPQPQLPLPSQLATDVPLLQFAANVGGNQQPQLQLPPLHEFPADVCGYQQPQAQPEPVWSEDENKQFEIIIAECLPEEMQNRWEAVAACLPGKTPEQIQERFQKNINLIHKSYSNLHHTSIAPAAPPTTLERNPPSLPGTSEQNQPANTNIIEHQPLTMTSERKKTVHWTQQEKELFLRGYKELGRKWKRISEDYVKTRTEKQVISHAQKVLKKLGKTNRKNNIRDES* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2230 344 SUPERFAMILY Homeodomain-like 278 331 IPR009057 -
Amo08g2230 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 277 332 IPR017930 -
Amo08g2230 344 ProSiteProfiles Myb-like domain profile. 175 222 IPR001005 -
Amo08g2230 344 Pfam Myb-like DNA-binding domain 174 220 IPR001005 -
Amo08g2230 344 Pfam Myb-like DNA-binding domain 283 328 IPR001005 -
Amo08g2230 344 SUPERFAMILY Homeodomain-like 172 221 IPR009057 -
Amo08g2230 344 Gene3D - 174 226 - -
Amo08g2230 344 Gene3D - 284 331 - -
Amo08g2230 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 280 327 IPR006447 GO:0003677
Amo08g2230 344 ProSiteProfiles Myb-like domain profile. 277 328 IPR001005 -
Amo08g2230 344 MobiDBLite consensus disorder prediction 235 263 - -
Amo08g2230 344 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 174 339 IPR043363 -
Amo08g2230 344 CDD SANT 285 328 IPR001005 -
Amo08g2230 344 CDD SANT 175 222 IPR001005 -
Amo08g2230 344 ProSiteProfiles SANT domain profile. 285 333 IPR017884 -
Amo08g2230 344 SMART sant 171 224 IPR001005 -
Amo08g2230 344 SMART sant 281 330 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2230 Amo-Chr8 35358409 35361150 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g2230 Myb_DNA-binding 8.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2230 - - ahf:112708481 601.668