Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2228 ATGTCGCTGTTCAAAAAGTTCTTCTACCGGCAGCCGCCGGATCGACTCCTTGAGGTCTCCGAGAGGGTCTTTGTATTTGACTGTTGCTTCTCGACGAATGTTGTGGAAAAAGAAGCGTACAAAGATTATATAGGGGGAATAGTAGCAGGTCTACAATATCACTTTCCAGATGCTTCAATCATGGTATGCAATTTCAGAGAATGGGAAACGCGGAGCCAGATATCAGATATGTTGGCACAATTTGACATGCCGGTTATGGAGTACCCTCAGCAATATGAGGGTTGTCCATTACTCCCTCTGGAGATGGTGCACCATTTCCTCCAATCAAGTGAAAGCTGGTTGTCTGTGGAGGGGCAGCAAAACGTCGTGTTATTGCATTGCGAAAGGGGGGGTTGGCCTGTCTTGGCGTTCATGCTAGCAGGTCTTCTCTTGTACAGGACGCATTATACAAGGGAGTTGAATACTCTTGAAATGGTCTACAAGCTAGTACGTAAAGAACTCTTATTTCCTTTTAATCCCCAACCTTCTCAGTTGAGATATCTCCAGTATGTTTCCAGAAGACATTTGGATTATGAGTGGCCTCCACAAGAAACACCCTTGCTTTTGTACTGTTTGATCCTCAGAGACCTTCCATTGTTTGGTGGTGGAGAAGGTTGCAGGCCTATTGTTCGTGTCTATGGTCCAGACCCTACAAGACCTGCCAATAGTAGCTCTAACATTCTTTTCCAAACTCCAGGTTCCCTCATTCGACACTACCCGCAGGCAGAATGTAGGCTCGTGGGAATTGATATCTATTGTTGTGTTCAAGGGGATGTTGTTCTTGAATGCATACATTTGAGTGAAGATTTAGTTCACGAGGAAATTATGTTTAGAATAATGTTTCATACTGCATTTGTTCACTCAAACATATTGATCTTGAGTCGTGACGATATTGATGTTGCGTGGGATTCAAAGGAGCAGTTTCCCAAGGACTTTAGAGCAGAGGTGCTTTTCTTGGACGTTTATGATCTTGTACATAATCTATCCAACGTAAGCCGAGATACAAGTGACACTGAAAGTGATTCACCAGATGAGTTCTATGAAGTGGAAGAGATCTTTACGAATGAAGATTGTTCAGATCCTCTTACTTCTCAAGACTCTACTTCAGATGATGGGAGTCACCAACAGGAAGTTGGAAAGGTAGAATCTTGTATTAACACAGTTAAAGATATTGCTGTTGATGATGTCAAATACAAGTTTCAAAGGATGACAGATTTGGATCCTCATGAGATTAAAGACATTGTTGTCGATGAAGTGGAGATTAAGTCGAATTCAATTGCAGACAATATGGATTTGCAAGATGAGGAGGTGACAATTATTATGCACAAGAATTTTGATGAAGGGGAGGAAAAGCATGATCTTTCTATGTCACATTCTGCTCATAAACTACATTCATCAGTTAATGACCCACCTCTTGAGTCAACCACAACTTAA 1473 0.4182 MSLFKKFFYRQPPDRLLEVSERVFVFDCCFSTNVVEKEAYKDYIGGIVAGLQYHFPDASIMVCNFREWETRSQISDMLAQFDMPVMEYPQQYEGCPLLPLEMVHHFLQSSESWLSVEGQQNVVLLHCERGGWPVLAFMLAGLLLYRTHYTRELNTLEMVYKLVRKELLFPFNPQPSQLRYLQYVSRRHLDYEWPPQETPLLLYCLILRDLPLFGGGEGCRPIVRVYGPDPTRPANSSSNILFQTPGSLIRHYPQAECRLVGIDIYCCVQGDVVLECIHLSEDLVHEEIMFRIMFHTAFVHSNILILSRDDIDVAWDSKEQFPKDFRAEVLFLDVYDLVHNLSNVSRDTSDTESDSPDEFYEVEEIFTNEDCSDPLTSQDSTSDDGSHQQEVGKVESCINTVKDIAVDDVKYKFQRMTDLDPHEIKDIVVDEVEIKSNSIADNMDLQDEEVTIIMHKNFDEGEEKHDLSMSHSAHKLHSSVNDPPLESTTT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2228 490 ProSiteProfiles C2 tensin-type domain profile. 197 334 IPR014020 -
Amo08g2228 490 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 185 IPR029021 -
Amo08g2228 490 SMART PTEN_C2_2 195 333 IPR014020 -
Amo08g2228 490 MobiDBLite consensus disorder prediction 463 490 - -
Amo08g2228 490 Gene3D Protein tyrosine phosphatase superfamily 14 201 IPR029021 -
Amo08g2228 490 Gene3D - 202 331 - -
Amo08g2228 490 Pfam C2 domain of PTEN tumour-suppressor protein 196 331 IPR014020 -
Amo08g2228 490 MobiDBLite consensus disorder prediction 473 490 - -
Amo08g2228 490 MobiDBLite consensus disorder prediction 370 394 - -
Amo08g2228 490 PANTHER FORMIN-J 1 475 - -
Amo08g2228 490 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 196 331 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2228 Amo-Chr8 35329123 35331836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2228 1 444 FH2 protein (formin) Gene Family AT5G07740 59.477 7.73e-170 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2228 - - adu:107463172 993.416