Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2225 ATGATTGCAGAGGAAATAGATGACGCAGCAATAATTGAAGAGGAGCTAAATGCTCTTTTAATGATGGATACCAAGGAGATGATGGAAGATCTGTTTCCCTTGGACTTGGACGATAATCATCAACAGCATTCTTGGGATAACACTCTTTCAAACATGGATATGGAGGATAACCCAGAAAAGATGAAAGAGGAACTGGATGCTTTATTCATGATGGAGGAGACGGAAGCTACCAAGCATTCTCAGCCTCAGCTACAGCCGCATACAACTACCATTGAAGAGCAATGTGCTATTGAAGTCGATCAGTTTTTCAATGACACTTGGGGTTATCAACCACCCTTAGAGATGATTGCAGCAGTGGGTGGTCATCAACCACTTCAATCTCAACAGCAACCCAGTCGCTGGGAAACCGTGGCTGCTCGCCTCCCCGGAAAGACTCCGGCACAGCTGCAAGAACGCTTCTTGAAACTGATGACTGAAGTTAATGCCATCAAAAATGGTTATCCTGAGAACAACATGAACATCATGATACCTTTGCCTGCTACTCCATTGGAACACAGCCCTCTCTTCATTCCTATGGTCAATGCAACACCACCACCTCCACCGCCTCATTGGACTCATCATCAACATCACAGGATGGAGGCAATGGCGCCAGCAGCAGACATGGCAGTGCCAATGCATATTACCTTACTGTCATCATCAATGTCAGGGGAACAAAACCAACATGCCAACAGCAACATAATCCAACACGAACCTTTACCTGCGAGTTCTAGTGACAACAATAAACGGCAACAAACAGTTCATTGGACTTTACAAGAGCACAAGTTGTTTCTCCAAGGATACGAAGAATTAGGAAAACAATGGTCAAGAATTTCAAGTGAATATGTTAAAACAAGAACTTATTCACAAGTTGTTAGTCACTCTCAAAAATTCTTTAAACGCCAAGAGAGAAGAGCTAAAGGAGAAAATTTAAGAAAGAGTATGCTGGACATAACTGATTAT 999 0.4284 MIAEEIDDAAIIEEELNALLMMDTKEMMEDLFPLDLDDNHQQHSWDNTLSNMDMEDNPEKMKEELDALFMMEETEATKHSQPQLQPHTTTIEEQCAIEVDQFFNDTWGYQPPLEMIAAVGGHQPLQSQQQPSRWETVAARLPGKTPAQLQERFLKLMTEVNAIKNGYPENNMNIMIPLPATPLEHSPLFIPMVNATPPPPPPHWTHHQHHRMEAMAPAADMAVPMHITLLSSSMSGEQNQHANSNIIQHEPLPASSSDNNKRQQTVHWTLQEHKLFLQGYEELGKQWSRISSEYVKTRTYSQVVSHSQKFFKRQERRAKGENLRKSMLDITDY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2225 333 Gene3D - 267 316 - -
Amo08g2225 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 315 IPR017930 -
Amo08g2225 333 ProSiteProfiles SANT domain profile. 263 315 IPR017884 -
Amo08g2225 333 CDD SANT 133 157 IPR001005 -
Amo08g2225 333 SUPERFAMILY Homeodomain-like 261 316 IPR009057 -
Amo08g2225 333 Pfam Myb-like DNA-binding domain 266 309 IPR001005 -
Amo08g2225 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 264 314 IPR006447 GO:0003677
Amo08g2225 333 Gene3D - 113 168 - -
Amo08g2225 333 SMART sant 84 159 IPR001005 -
Amo08g2225 333 SMART sant 264 313 IPR001005 -
Amo08g2225 333 CDD SANT 268 306 IPR001005 -
Amo08g2225 333 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 128 332 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2225 Amo-Chr8 35287879 35289723 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo08g2225 Myb_DNA-binding 1.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2225 - - aip:110269155 222.246