Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2223 GAAGTTTCTAATATGTTTCAACTCAAAATATTTTCAAGTTGGTTGATATTTCTGAGTGTATTGAGGCACAGTTATCCAATCACAGATCCTGATGTGGAAGGGGAAGCATTGATTGAATTTCTGAGGGCCCTCAATGATTCCAACAATCAAATTAAAGATTGGAATAGTTTTTTTGTGAGCCCCTGCTATAGTTGGTCTAATGTTGATTGTAGCAACAAACATGTTATATCTCTGAACTTGGCATCAAAAGGATTTTCTGGAACACTTTCTCCCTCAATTGCCAAATTGAAATACTTGGTTAGCTTGGAGTTGCAGGACAACAATCTTGCAGGCCCTTTACCTGACTACATCGCCAATTTAACGCGCCTCGAATATCTTAATCTTGCTGAAAATAATTTCAGAGGTTCTGTCCCGGCTACTTGGGGCAGACTTTCGAGTCTAAAGCATCTGTTGTTGAAAGGGAATGAGTTATCTGGACATATTCCAGATACAATTGCAAACCTTACTGGATTGGCAGAATTGGATCTTTCATCTAATGGTCTTACTGGAACTGTCCCAATGCCACTCTTTTCATTTCCAATATTTAACTTGGATCAGCCTTGTGCTTCTAAACCTTCACTTTCTGGTTCAACCAACAAACCAAAACTTGTAAAGATTGTTGGTTTTGCAAGTTGTGGTTTATTTGCACTGATAATTCTTGGGGCTATCTTTGTATATAGATACCATCACATGCACAGACATAAAACTGATGTCTTTTTTGATGTTTCAGGTGAAGATGAGAGCCAAATTTCCTTTTGGCAACTGAGAAGATTTTCATGGCGTGAACTGCAACACGCGACTAAAAATTTCAGCAAAAGCAATGTAATTGGCACAGGAGGATTTGGAAAAGTSTATAAAGGAGTACTCTCAGATGGCACAAAAGTGGCRGTGAAACGCCTCGCCGATTATCAGGCTCCTGGTGGAGAAGCTGCATTCCAAAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAAGAATCTGCTAAGATTAATTGGATACTGTACAACCTCAYCTGAAAGAATCCTAGTGTACCCTTTCATGGAAAATAGAAGTGTAGCATATCAATTGAGAGATTTAAAAGAAGGTGAGAAAGGTTTAGACTGGGCAATGAGGAAAAATGTGGCATTTGGCACAGCACATGGATTAGATTATTTACATAATCAATGCAACCCTAAGATAATTCACCGTGATTTGAAAGCCGCAAATATTTTGTTAGATGATAACTTTGAAGCTGTTCTTGGAGACTTTGGCCTAGCTAAACTTGTTGATACAAGGGTGACTCATGTTACTACTCAAGTGAGAGGCACAATGGGTCATATAGCACCAGAATACTTGTGCACCGGAAAATCATCAGAGAAGACTGATGTGTTTGGATATGGTATAACACTTCTTGAATTGGTCACCGGTCAACGTGCCGTTGACTTATTTCGGCTTCAAGAGGAGGAGGAGGATGTTCTTCTGCTTGATCATATAAAAAAACTATTGAAGGAAGACAGGGTGAAGGACATAGTAGATAGAAACCTAGAGACATATGATTCAGAGGAAGTAGAGAGAATAATTCATGTTGCATTGCTTTGCACAAGAAACTACCCAGAGGAGCGTCCCACAATGTCAGAGATAGTGAAAATGCTTCAAGGAGTGGGTTTGCAAGAGAGATGGAATGAATTGGAGCAACATAATAATGAAGAAGAGGTTAGTAATCAACTCATGTCTCACCAGTTTGTTTGGACTGCTGAATATTCAACCCTTGATCAAGAAGCTATAAGGCTTTCAGCAGCAAGATAA 1824 0.3904 EVSNMFQLKIFSSWLIFLSVLRHSYPITDPDVEGEALIEFLRALNDSNNQIKDWNSFFVSPCYSWSNVDCSNKHVISLNLASKGFSGTLSPSIAKLKYLVSLELQDNNLAGPLPDYIANLTRLEYLNLAENNFRGSVPATWGRLSSLKHLLLKGNELSGHIPDTIANLTGLAELDLSSNGLTGTVPMPLFSFPIFNLDQPCASKPSLSGSTNKPKLVKIVGFASCGLFALIILGAIFVYRYHHMHRHKTDVFFDVSGEDESQISFWQLRRFSWRELQHATKNFSKSNVIGTGGFGKVYKGVLSDGTKVAVKRLADYQAPGGEAAFQREVQLISVAVHKNLLRLIGYCTTSXERILVYPFMENRSVAYQLRDLKEGEKGLDWAMRKNVAFGTAHGLDYLHNQCNPKIIHRDLKAANILLDDNFEAVLGDFGLAKLVDTRVTHVTTQVRGTMGHIAPEYLCTGKSSEKTDVFGYGITLLELVTGQRAVDLFRLQEEEEDVLLLDHIKKLLKEDRVKDIVDRNLETYDSEEVERIIHVALLCTRNYPEERPTMSEIVKMLQGVGLQERWNELEQHNNEEEVSNQLMSHQFVWTAEYSTLDQEAIRLSAAR* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2223 607 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 607 - -
Amo08g2223 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Amo08g2223 607 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Amo08g2223 607 Gene3D Phosphorylase Kinase; domain 1 252 359 - -
Amo08g2223 607 SMART serkin_6 283 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2223 607 PANTHER LRR RECEPTOR-LIKE KINASE 12 607 - -
Amo08g2223 607 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Amo08g2223 607 Pfam Protein kinase domain 284 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2223 607 SUPERFAMILY Protein kinase-like (PK-like) 261 558 IPR011009 -
Amo08g2223 607 ProSiteProfiles Protein kinase domain profile. 283 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2223 607 Gene3D Transferase(Phosphotransferase) domain 1 360 577 - -
Amo08g2223 607 Gene3D Ribonuclease Inhibitor 30 203 IPR032675 -
Amo08g2223 607 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Amo08g2223 607 SUPERFAMILY L domain-like 34 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2223 Amo-Chr8 35266271 35270633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2223 30 601 Receptor kinase-like Gene Family AT5G65240 55.026 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo08g2223 Pkinase 4.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2223 - - adu:107463312 1191.02