Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2220 ATGATTACAGAGGAAATAGATGACGCAGCAATAATTGAAGAGGAGCTAAATGCTCTTTTAACGATGGATGCCAAGGAGATGATGGAAGATCTGTTTGCCTTGGACTTGGAAGATAATCAACAGCATTCTTGGCATAACACTCTATCAAACATGGATATGGAGGATAACCCAGAAAAGATGAAAGAGGAACTGGATGCTTTATTCATGATGGAGGAGACGGAAGCTACCAAGCATTCTCAGCCTCAGCTACAGCCGCATACAACTACCATTGAAGAGCAATGTGCTATTGAAGTCGATCAGTTTTTCAATGACACTTGGGGTTATCAACCACCCTTAGAGATGATTGCAGCAGTGGGTGGTCATCAACCACTTCAATCTCAACAGCAACCTCAGGTCTGGACTTGGGAGGAGAACAAAGCCTTTGAATCGGTTATGGCCAATTGTTTCCAAGATTCTATATACAGTCGCTGGGAAACCGTGGCTGCTCGCCTCCCGGGAAAGACTCCGGCACAGCTGCAAGAACGCTTCTTGAAACTGATGACTGAAGTTAATGCCATCAAAAACGGTTATCGTGAGAACATGAACATCATGATACCTTTGCCTGCTACCCCATTGGAACACAGCCCTCTCTTCATTCCTATCGTCAATGCAACACCACCACCTCCACCGCCTCATTGGACTCATCATCAACCTCCCAGGATGGAAGCAATGGCGCCGGCCGCAGACATGGCATTGCCAATGCATATTACCTTACTGTCATCATCAATGTCAGGGGAACAAAACCAACATGCTAACAGCAACATAATCCAACACGAACCTTTACCTGCGGCTTCTAATGACAACAATAAACGGCAACAAACAGTTCATTGGACTTTACAAGAGCACAAGTTGTTTCTCCAAGGGTACGAAGAATTAGGAAAACAATGGTCAAGAATTTCAAGTGAATATGTTAAAACAAGAACTTATTCACAAGTTGTTAGTCACTCTCAAAAATTCTTTAAACGCCAAGAGAAAAGAGCTAGAGGAGAAAATCTAAAAAGAAAGAGTATGCTTGACATAACTGATTATAGAACTATAACATAA 1083 0.4275 MITEEIDDAAIIEEELNALLTMDAKEMMEDLFALDLEDNQQHSWHNTLSNMDMEDNPEKMKEELDALFMMEETEATKHSQPQLQPHTTTIEEQCAIEVDQFFNDTWGYQPPLEMIAAVGGHQPLQSQQQPQVWTWEENKAFESVMANCFQDSIYSRWETVAARLPGKTPAQLQERFLKLMTEVNAIKNGYRENMNIMIPLPATPLEHSPLFIPIVNATPPPPPPHWTHHQPPRMEAMAPAADMALPMHITLLSSSMSGEQNQHANSNIIQHEPLPAASNDNNKRQQTVHWTLQEHKLFLQGYEELGKQWSRISSEYVKTRTYSQVVSHSQKFFKRQEKRARGENLKRKSMLDITDYRTIT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2220 360 Gene3D - 125 192 - -
Amo08g2220 360 SMART sant 129 182 IPR001005 -
Amo08g2220 360 SMART sant 286 335 IPR001005 -
Amo08g2220 360 Pfam Myb-like DNA-binding domain 288 331 IPR001005 -
Amo08g2220 360 Pfam Myb-like DNA-binding domain 131 179 IPR001005 -
Amo08g2220 360 Gene3D - 289 338 - -
Amo08g2220 360 CDD SANT 133 180 IPR001005 -
Amo08g2220 360 SUPERFAMILY Homeodomain-like 283 338 IPR009057 -
Amo08g2220 360 CDD SANT 290 328 IPR001005 -
Amo08g2220 360 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 130 356 IPR043363 -
Amo08g2220 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 282 337 IPR017930 -
Amo08g2220 360 ProSiteProfiles Myb-like domain profile. 133 180 IPR001005 -
Amo08g2220 360 SUPERFAMILY Homeodomain-like 127 187 IPR009057 -
Amo08g2220 360 ProSiteProfiles SANT domain profile. 285 337 IPR017884 -
Amo08g2220 360 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 286 336 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2220 Amo-Chr8 35255479 35257419 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g2220 Myb_DNA-binding 8.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2220 - - aip:110269155 265.388