Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2194 ATGGGAGACGGAGGTTCTGGCAACCGCGGCGGCAACAGCAACAATAGCGGCGGCGGAAGCAACAAGCCGGAGTGGCTCCAGCAATACGATCTCATAGGGAAGATCGGAGAAGGCACGTACGGACTCGTGTTCTTGGCGCGCATAAAGTCCCAAACCAATCGCGGCAAATCCATTGCCATCAAGAAATTCAAGCAGTCCAAAGATGGCGACGGTGTTTCTCCCACCGCTATTCGCGAAATCATGCTGCTGAGGGAGATAACCCACGAGAATGTTGTGAAGCTTGTAAATGTACACATCAATCACGCGGACATGTCTCTGTATCTTGCTTTTGATTACGCCGAGCACGACCTCTATGAAATAATTAGACATCATAGGGACAAAGTCAACCATTCCATTAATCAGTACACTGTTAAATCATTACTCTGGCAGTTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATAATACATCGAGATTTAAAGCCCTCAAATATACTGGTTATGGGTGAAGGGGAGGAGCATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTACCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACTAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGTAGAAGTCAAAGCTACCCCAAATCCCTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTCCCCCATTGGCAACAAGATGTTCAACATATACAAGGGCATAAATATGATAACAACAGTCTCTATAATGTTGTTCACCTATCTCCAAAAAGTCCTGCATTTGACCTTTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATTACAGCAGCACAAGCTTTGGAACATGAGTATTTCAAAATTGAACCACAGCCTGGGCGGAATGCCCTTGTACCCTGCCAACCGGGAGAGACATTTGTGAATTATCCCACTCGTCCAGTGGACACAACAACCGATTTTGAAGGGACAACCAATATGCAACCTCCACAGCCGAGTCAGGTTACATCGGGAGCTGCAGTTTCTGGCAGTATGCCTGGTGGTCATGTGTCAAATAGATCTGTTCCTCGACCAATGAATGTTGTTGGGATGCAAAGAATGCCTCATCAGGCAATGCAAGCTTATAATCTTACATCTCAGGCAGGGATGGGTGGTGGAATGAACCCTGGTGGCATGCCGATGCAACGAGGTGTACCACAGCCGCATCAGCAACAGCAGTTGAGGAGAAGAGACCAAATGGGGATGCCAGGATACCCTCAACAAAAGTCAAGACGTATATAA 1437 0.4565 MGDGGSGNRGGNSNNSGGGSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSQTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDVQHIQGHKYDNNSLYNVVHLSPKSPAFDLLSKMLEYDPRKRITAAQALEHEYFKIEPQPGRNALVPCQPGETFVNYPTRPVDTTTDFEGTTNMQPPQPSQVTSGAAVSGSMPGGHVSNRSVPRPMNVVGMQRMPHQAMQAYNLTSQAGMGGGMNPGGMPMQRGVPQPHQQQQLRRRDQMGMPGYPQQKSRRI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2194 478 MobiDBLite consensus disorder prediction 377 407 - -
Amo08g2194 478 PANTHER CYCLIN-DEPENDENT KINASE E-1 16 476 - -
Amo08g2194 478 MobiDBLite consensus disorder prediction 1 22 - -
Amo08g2194 478 Gene3D Transferase(Phosphotransferase) domain 1 112 353 - -
Amo08g2194 478 ProSitePatterns Protein kinases ATP-binding region signature. 35 62 IPR017441 GO:0005524
Amo08g2194 478 ProSiteProfiles Protein kinase domain profile. 29 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2194 478 SUPERFAMILY Protein kinase-like (PK-like) 24 340 IPR011009 -
Amo08g2194 478 Gene3D Phosphorylase Kinase; domain 1 19 111 - -
Amo08g2194 478 MobiDBLite consensus disorder prediction 377 393 - -
Amo08g2194 478 MobiDBLite consensus disorder prediction 434 478 - -
Amo08g2194 478 MobiDBLite consensus disorder prediction 7 22 - -
Amo08g2194 478 PANTHER CELL DIVISION PROTEIN KINASE 16 476 - -
Amo08g2194 478 CDD STKc_CDK8_like 28 339 - -
Amo08g2194 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Amo08g2194 478 Pfam Protein kinase domain 29 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g2194 478 SMART serkin_6 29 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2194 Amo-Chr8 34885495 34891480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2194 22 478 Core Cell Cycle Gene Families AT5G63610 76.890 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Amo08g2194 Pkinase 1.7e-68 CL0016