Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2184 ATGATGAATCCATGGGATATCAAAGACCCGTGGGATATGATAGACTTTGATGCCGACGATGAAGCACCGCAGTTTCAGTTTGAGTGTCCGCCTCTGCCTGAGCCCGTCTGGAATGGGGACGAAAACAATGTAGGTGAGCCGTGTGCCATGGACGTGAGTGGTAATCAACCACCTCAGCCGTCTCGGCCTCAGCCATGTGCCATGGACGTGAGTGGTAATGAACCACCTCAGCCAGTTATTGATGAGTGTTTCCCGGAAGTTATGAAGAGGACAGAGCACTATTGGGGAAGCCCATTATCTGGTTCTCAACCACTTCAGTCTCAGTCTCAGTCTCAGTCACGTGCCATTGACGTGTGTGGTAATCAACCACTTCAGTCTCAATCTCAGACGGATATAGTAAGGACGCTGACGGATGAGTTTTTCGCTGACACCTGTGGTTATCCACCACCTCAGCCTCAGCCTCAGACTCAGTGGGACACCAGTAGAAACATGTTAGAGCTGATTCCCGATGTCGGTGGTCATCAACCACTTCAACCTCAAGCTTCGGTCTGGACTTGGGAGGAGAACAAAGCATTTGAGTCAATTATTACCAGTTGTTTTCAGGATGATATCCAGAACCGCTGGGAGGCCGTGGCTGCTCGTCTCCCCGGCAGGACCCCGACACAGCTGCAAGAACGCTTTCAGAAGCTGATGAACGACATCAATACAATGACCATCATGATGGAACACAACCCTCTCTCCATCCCTATCAATGCAACAACACCACCACCACCATCACACCCTTATTCGACTCATCATCATCACAGGGAGGAGGTCGTGCCAGCTGCAGAGGAGGAGGTAGTGCCAACTGCACAAGAGGAGGCAGCACCAACAAACACAGGATATCATTGGACTGAAGATGAACATAGGTATTTATTATTATATTACTTCTTTTTACCTCTTATTTATTTTTTATTTATTATTTTGTTGAATATTGAAGGTTCACACTGGAAAAGAATTTCAGAATATTATGTAAAAACAAAAACTCCTAGTCAAATTTCCAGTCATGCTCAGAAACATTTTTTACATCAAGAAGAATTAGCTAAAGGAAAAAAGTTAAGGAAAAGCATTTTTGATTTTTCCGGCCTTGATGGCAATGCCGAAGGGGACGAGAACGTTTGCCATAGGTTGATAATAGTTTGTTTATCAAGAAAAAGGACATTCATAACCAAATTTATTTCTTTGCTTGCTGCTGCTAATAATATCAGAGAAAACCCAGTATCAGGAATTCAATCATGGGATTGGAATCTGAGTGAACCTGACCCAGCACTGAGAATAGTTTGTCCTCAGATCTCACCTATTATACCCCATAATTACAAGGAGAGTAGCTTTCCTGCACCAGTTTTTACTTTCGTGTTAAATAATTTTGGAAAAACAACAGCAGATGTCACCTTGCTTTTCACATGGATTAAATAG 1455 0.4392 MMNPWDIKDPWDMIDFDADDEAPQFQFECPPLPEPVWNGDENNVGEPCAMDVSGNQPPQPSRPQPCAMDVSGNEPPQPVIDECFPEVMKRTEHYWGSPLSGSQPLQSQSQSQSRAIDVCGNQPLQSQSQTDIVRTLTDEFFADTCGYPPPQPQPQTQWDTSRNMLELIPDVGGHQPLQPQASVWTWEENKAFESIITSCFQDDIQNRWEAVAARLPGRTPTQLQERFQKLMNDINTMTIMMEHNPLSIPINATTPPPPSHPYSTHHHHREEVVPAAEEEVVPTAQEEAAPTNTGYHWTEDEHRYLLLYYFFLPLIYFLFIILLNIEGSHWKRISEYYVKTKTPSQISSHAQKHFLHQEELAKGKKLRKSIFDFSGLDGNAEGDENVCHRLIIVCLSRKRTFITKFISLLAAANNIRENPVSGIQSWDWNLSEPDPALRIVCPQISPIIPHNYKESSFPAPVFTFVLNNFGKTTADVTLLFTWIK* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2184 484 Gene3D - 296 358 - -
Amo08g2184 484 CDD SANT 184 231 IPR001005 -
Amo08g2184 484 SMART sant 180 233 IPR001005 -
Amo08g2184 484 SMART sant 293 356 IPR001005 -
Amo08g2184 484 MobiDBLite consensus disorder prediction 94 114 - -
Amo08g2184 484 ProSiteProfiles Myb-like domain profile. 184 231 IPR001005 -
Amo08g2184 484 SUPERFAMILY Homeodomain-like 290 359 IPR009057 -
Amo08g2184 484 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 180 374 IPR043363 -
Amo08g2184 484 Pfam beta-glucosidase 2, glycosyl-hydrolase family 116 N-term 430 482 IPR024462 -
Amo08g2184 484 MobiDBLite consensus disorder prediction 31 67 - -
Amo08g2184 484 Gene3D - 178 240 - -
Amo08g2184 484 SUPERFAMILY Homeodomain-like 182 236 IPR009057 -
Amo08g2184 484 MobiDBLite consensus disorder prediction 96 114 - -
Amo08g2184 484 Pfam Myb-like DNA-binding domain 183 230 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2184 Amo-Chr8 34770643 34775938 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo08g2184 Glyco_hydr_116N 9.6e-16 CL0103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2184 K17108 - adu:107463192 612.453