Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2177 ACACCACCACCATCACAGCCTTATTCGACGGATCATCATCACAGGGTGGAGGTCGTGCCAGCTGCAGAGGAGGAGGTCGTGCCAACTGCACAAGAGGAGGCAGCACCAACAAACACAGGATATCATTGGACCGAAGATGAACATAGGTTATTTATTAAAGGGTACCAAGAAGAAGGTTCACACTGGAAAAGAATTTCAGAATATTATGTAAAAACAAAAACTCCGAGTCAAATTTCCAGTCATGCTCAGAAACATTTTTTACATCAAGAAGATTTGGCTAAAGGAAAAAAGCTAAGAAAAAAAATTGTGCCCTATTCCGAGGTTTTTAATGGATGGAGGAGGATTTGCTTAAAGGAGGAAGAACATTTCTCCGGCCTTGATGGCAATGTCGAAGGGGACGGCGAACTAGATTTTATCTAA 420 0.4214 TPPPSQPYSTDHHHRVEVVPAAEEEVVPTAQEEAAPTNTGYHWTEDEHRLFIKGYQEEGSHWKRISEYYVKTKTPSQISSHAQKHFLHQEDLAKGKKLRKKIVPYSEVFNGWRRICLKEEEHFSGLDGNVEGDGELDFI* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2177 139 SUPERFAMILY Homeodomain-like 36 91 IPR009057 -
Amo08g2177 139 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 40 89 IPR006447 GO:0003677
Amo08g2177 139 CDD SANT 43 86 IPR001005 -
Amo08g2177 139 Pfam Myb-like DNA-binding domain 43 85 IPR001005 -
Amo08g2177 139 SMART sant 39 88 IPR001005 -
Amo08g2177 139 PANTHER TRANSCRIPTION FACTOR KUA1 30 101 - -
Amo08g2177 139 PANTHER TRANSCRIPTION FACTOR SRM1 30 101 - -
Amo08g2177 139 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 90 IPR017930 -
Amo08g2177 139 Gene3D - 42 90 - -
Amo08g2177 139 ProSiteProfiles Myb-like domain profile. 43 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2177 Amo-Chr8 34709917 34711439 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo08g2177 Myb_DNA-binding 2.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2177 - - ahf:112773133 182.956