Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2170 ATGTCTTCAAAGGGCAAGAGGAAGGAGGAGCAGGACAACGCTTCTGATGCCGACTCTGAAGGCCATGCACCGCCCAAAAAAACCTCCAAAACCGCCACTACCACCAACGCCGATTCTGAGGACCCCGACTCCATCGTCGTCTGCGAGATTTCGAAGAACAGGAGGGTTTCGGTGAGGAACTGGCAGGGGAAAATTGTCGTCGACATTCGTGAGTTTTACGTCAAAGATGGCAAGCAACTCCCTGGAAAGAAAGGGATCTCGTTGACCATGGATCAGTGGAATGTGCTTCGTAACCACGTTGAAGAAATTGACAAGGCAGTTACTGAGAATTCCTGA 336 0.506 MSSKGKRKEEQDNASDADSEGHAPPKKTSKTATTTNADSEDPDSIVVCEISKNRRVSVRNWQGKIVVDIREFYVKDGKQLPGKKGISLTMDQWNVLRNHVEEIDKAVTENS* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2170 111 MobiDBLite consensus disorder prediction 26 41 - -
Amo08g2170 111 Gene3D Transcriptional Coactivator Pc4; Chain A 38 111 IPR009044 GO:0003677|GO:0006355
Amo08g2170 111 MobiDBLite consensus disorder prediction 1 25 - -
Amo08g2170 111 MobiDBLite consensus disorder prediction 1 44 - -
Amo08g2170 111 Pfam Transcriptional Coactivator p15 (PC4) 48 99 IPR003173 GO:0003677|GO:0006355
Amo08g2170 111 PANTHER BNAC09G47220D PROTEIN 1 109 - -
Amo08g2170 111 SUPERFAMILY ssDNA-binding transcriptional regulator domain 47 108 IPR009044 GO:0003677|GO:0006355
Amo08g2170 111 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 109 IPR045125 GO:0003713|GO:0060261
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2170 Amo-Chr8 34637239 34639406 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Amo08g2170 PC4 1e-25 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2170 K25815 - gmx:100820368 158.688