Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2168 ATGTCTTCAAAGGGCAAGAGGAAGGAGGAGCAGGACAACGCTTCTGATGCCGACTCTGAAGGCCATGCACCGCCCAAAAAAACCTCCAAAACCGCCACTACCACCAACGCCGATTCTGAGGACCCCGACTCCATCGTCGTCTGCGAGATTTCGAAGAACAGGAGGGTTTCGGTGAGGAACTGGCAGGGGAAAATTGTCGTCGACATTCGTGAGTTTTACGTCAAAGATGGCAAGCAACTCCCTGGAAAGAAAGGTTATGCTTCCTTCACGTGGAATGTGCTTCGTAACCACGTTGAAGAAATTGACAAGGCAGTTACTGAGAATTCCTGA 330 0.503 MSSKGKRKEEQDNASDADSEGHAPPKKTSKTATTTNADSEDPDSIVVCEISKNRRVSVRNWQGKIVVDIREFYVKDGKQLPGKKGYASFTWNVLRNHVEEIDKAVTENS* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2168 109 MobiDBLite consensus disorder prediction 26 41 - -
Amo08g2168 109 MobiDBLite consensus disorder prediction 1 25 - -
Amo08g2168 109 Gene3D Transcriptional Coactivator Pc4; Chain A 38 109 IPR009044 GO:0003677|GO:0006355
Amo08g2168 109 PANTHER BNAC09G47220D PROTEIN 1 107 - -
Amo08g2168 109 SUPERFAMILY ssDNA-binding transcriptional regulator domain 47 106 IPR009044 GO:0003677|GO:0006355
Amo08g2168 109 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 107 IPR045125 GO:0003713|GO:0060261
Amo08g2168 109 Pfam Transcriptional Coactivator p15 (PC4) 48 85 IPR003173 GO:0003677|GO:0006355
Amo08g2168 109 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2168 Amo-Chr8 34622257 34624165 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Amo08g2168 PC4 9e-17 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2168 K25815 - gmx:100820368 139.043