Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2162 ATGGCAGGGAGGAGGTACTGCCGGCTGCAGAGGAGGAGGTTATTTCTTAGAGGGTACGAAGAAGAAGGTAAACACTGGAAAAGAATTTCAGAATATTATGTAAAGACAAAAACTTCTAGTCAAATTGCCAGTCATGCTCAGAAATATTTTAAACATCAAAAAGACTTGGCTAAAGGAAAAAAGCTAAGAAAAAGTATTTTTGATGTTTTTAATGGATGGAGGAGGCTTTGCTTAAAGGAGGAAGAACATTTCTCTGGCCTTGATGGCAATGCCGAAGAGGACGGTGAACTAGATTTTATCAAAAGTCTTGATGGCTACGCCGAAGGGACTTTTGTATTACACAATTACTCCAATTAA 357 0.3838 MAGRRYCRLQRRRLFLRGYEEEGKHWKRISEYYVKTKTSSQIASHAQKYFKHQKDLAKGKKLRKSIFDVFNGWRRLCLKEEEHFSGLDGNAEEDGELDFIKSLDGYAEGTFVLHNYSN* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2162 118 SUPERFAMILY Homeodomain-like 12 55 IPR009057 -
Amo08g2162 118 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 13 53 IPR006447 GO:0003677
Amo08g2162 118 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 79 - -
Amo08g2162 118 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 54 IPR017930 -
Amo08g2162 118 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 13 79 - -
Amo08g2162 118 Pfam Myb-like DNA-binding domain 14 50 IPR001005 -
Amo08g2162 118 Gene3D - 12 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2162 Amo-Chr8 34580273 34581762 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo08g2162 Myb_DNA-binding 5.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2162 - - ahf:112773219 121.324