Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2157 ATGGCCTCTGATCATAACTTTCTAGACTTTTTTCTCGAGGAGATAGAGTTTGAGAATGAAAGAGAGAATGATCAGTTTTATTCTTATGATTACAACAATGAATTGTCAAAATCTGAGAGCCAGTTATGTGTACCTCTAGATCCGGTAGAAGATTTAGAATGGTTTCCGAATTTTCAAGACGATTTAATATCTTTAAAGAACTATGATGACTACCAATCATCACATCCCCAGAATTATTATTTTGTTGATGACAACTCGAATCAATTTCGCGAAAGCTTCGATCAACCGGCTACTCCTCACCAACAAAAGGAAACTAAGTCAAAGCATGAAGATACTGGCGTAAAAGACGATGAGAACGATGAGTATGTGTTGATGGATATGAACGGTCGTAGAAAAAGGAAAAAGTCCAGGACAACAATTAACAGGAAGCCGAGGAAAAATATGAAATTTGAGACTAAAAGATGTGCTCATTGCGAAGTAGAGGAAACTCCTCAATGGAGGAATGGACCCATGGGTCCGAAAACATTGTGCAATGCATGTGGTGTGCGCTACAAGTCTGGTAGGTTGTTACCGGAATATCGTCCCAAGGCAAGTCCATCTTTTGATAGCAGTAAACATTCCAATTATCATAAGAAGATAACAAGGAGGTTTCTGCTCGTTATCGTGGGGATTCAACGGTTACAAGATCAGATGAATGGCCATGGTAGTATCTCCAGGTATCTCGTGAAATAG 732 0.3921 MASDHNFLDFFLEEIEFENERENDQFYSYDYNNELSKSESQLCVPLDPVEDLEWFPNFQDDLISLKNYDDYQSSHPQNYYFVDDNSNQFRESFDQPATPHQQKETKSKHEDTGVKDDENDEYVLMDMNGRRKRKKSRTTINRKPRKNMKFETKRCAHCEVEETPQWRNGPMGPKTLCNACGVRYKSGRLLPEYRPKASPSFDSSKHSNYHKKITRRFLLVIVGIQRLQDQMNGHGSISRYLVK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2157 243 MobiDBLite consensus disorder prediction 90 118 - -
Amo08g2157 243 CDD ZnF_GATA 154 205 IPR000679 GO:0006355|GO:0043565
Amo08g2157 243 Gene3D - 149 199 IPR013088 GO:0006355|GO:0008270
Amo08g2157 243 Pfam GATA zinc finger 155 189 IPR000679 GO:0006355|GO:0043565
Amo08g2157 243 PANTHER GATA TRANSCRIPTION FACTOR 14 216 - -
Amo08g2157 243 PANTHER GATA TRANSCRIPTION FACTOR 4-LIKE 14 216 - -
Amo08g2157 243 MobiDBLite consensus disorder prediction 101 118 - -
Amo08g2157 243 SMART GATA_3 149 199 IPR000679 GO:0006355|GO:0043565
Amo08g2157 243 ProSitePatterns GATA-type zinc finger domain. 155 180 IPR000679 GO:0006355|GO:0043565
Amo08g2157 243 ProSiteProfiles GATA-type zinc finger domain profile. 149 185 IPR000679 GO:0006355|GO:0043565
Amo08g2157 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2157 Amo-Chr8 34495695 34496783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2157 18 227 C2C2-Gata Transcription Factor Family AT4G36240 38.073 8.45e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo08g2157 GATA 4.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2157 - - adu:107463157 445.662