Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2155 ATGAGCAGCGGCGGCCGGAAACGCCCTGCTCCACCGACTTCGCATCCCTCGCCGGCCACCCAGGCGAAAACCCAGGCCCTGTCTCAGGAAGATGATTTCGTCGATGAGGATGTGTTCCTCAACGAAACCCTCATCACGGAGGACGAAGAGTCCCTCATCCTCCGCGACATCGAGGAGCGCCAGGCCCTCGCTAACCGCCTCTCCAAGTGGACCCGCCCTCCCCTCTCCTCCGACTACGTTTCGCAATCTTGCAGCGTCCTTTTTCAGCAGCTGGAGATTGATTACGTAATTGGAGAGAGCCACAAAGTGTTGATGCCGAATTCGTCTGGACCTGCTGCTATAATTAGAATATTTGGTGTTACAAAGGAAGTGTTGCTTGAACTTGCTTTTACTTTTCATACTGCGAAAGCATTTGAAGGGTTAGAAGTCGTCTTAAAGAGAGCAGTAGTAGTTGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCAGCTGCCCGCCTGGAATGGGTCCGGATGATATCTCCCATTTTCATCAAACTCTTGAGGGAAGGATGCGAGAGGCCAATAGAAACAGTAACGTGGGCAAATTTGTTCGTCGTATTGAATTGGTGCAGAGAAGGAGCATTATGTATTATCAGCAGTCCAGTTCTCATCCCTTTCTCAAAATTGTAGTTGCTCTCCCCACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTAATGGTCTTGGCATGAAGAGCTTCATGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGCAATATAGTTGGTGGTAATTGGATTGAAATTCCTGCTGGGAAATATAAGAAGACAGCAAGAAGCTTGTCTAACTGTCAGTTAGAGTTTGATTGCTTGCATTCGGAATTGATTAGCCATGCTCCAGAAGGTGAATATTCAAAGATGGCACCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATCTGGTTACATTACAAGGAGAAGATCAGCCATTCATCCGTAATGTGATGACCCTTAATTCATGTTCTCCCATAGTTGGTGTTGATGTGATGTCGTTTGATACAGAAAGAGAAGTCCTTCTGGCCTGGAGGGATTTCATCCATGAAGTTGACCCTGATATTATAATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTCAAGCCTTGAAAATAGCAGAATTTCCTATTCTGGGCCGTATCAGGAACAGTAGGGTCCGAGTAAAGGATACAACTTTTTCATCTAGACAGTATGGAACCAGAGAAAGTAAAGAAGTTGCTGTAGAAGGGAGAGTTCAGTTTGATCTGCTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCTTTGAATTCTGTTTCAGCACACTTTCTTTCTGAGCAGAAAGAGGATGTTCACCATTCTATCATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTAAAGGATGCTTATCTCCCTCAACGGCTTTTAGATAAATTGATGTTCATTTATAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTGCTTGCTAGGGGCCAAAGCATTAAGGTACTTTCTCAACTCCTTAGGAAGGCAAAGCAGAAGAACCTGGTTCTTCCTAATGTAAAACAGGCTGGTTCAGAACAAGGAACATATGAAGGTGCCACTGTATTGGAGGCAAGAGCTGGGTTCTATGAAAAGCCAATTGCTACTTTGGATTTTGCATCACTATATCCATCTATTATGATGGCCTATAATTTATGTTATTGTACCCTGGTGACTCCTGAAGATGTTCGGAAACTTAATCTCCCTCCAGAATCAGTGAACAAAACTCCATCTGGGGAAACATTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATTCTTGAAGAGCTTTTAGCCGCGCGTAAAAGGGCAAAAGCAGATTTGAAGGAGGCAAAAGATCCCCTTGAGAAAGCCGTGCTTGATGGTAGACAACTGGCCCTAAAGATCAGTGCAAATTCTGTATATGGGTTTACTGGGGCAACTATTGGTCAGTTACCATGCTTGGAGATATCATCAAGTGTAACTAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTTACAACTCTTAATGGCTATGAACACACTGCCGAGGTAATATATGGTGACACGGATTCAGTCATGGTTCAGTTTGGTGTTTCTACCGTAGAAGAGGCTATGAATCTGGGAAGAGAAGCTGCTGAATATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAGTTTGAGAAGGTTTACTTTCCATATCTCCTAATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGGAGAGACAATTGTTTATTAGTCAAAAACCTTGTGAACGATTGCCTTCACAAAATATTGATTGATAGGGACATCCCTGGGGCAGTTCAATATGTTAAAAATGCAATTTCAGATCTTCTTATGAACCGAATGGATTTATCACTTTTGGTTATTACAAAGGGTTTGACAAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGGGATAGAGTACCGTATGTCATTATTAAAGCTGCAAAGGGTGCCAAGGCTTATGAGAGATCAGAGGATCCAATATACGTCCTGGAGAACAATATTCCCATAGATCCCCAATACTATCTTGAGAATCAAATCAGCAAGCCAATTCTAAGGATTTTTGAGCCAATTCTGAAGAATGCTAGCAAAGAACTTCTCCATGGAAGCCACACAAGATCTATTTCCATTTCTACTCCGTCAAACAGTGGCATCATGAAATTTGCTAAGAAACAGCTAACTTGCATTGGTTGCAAAGCTTTACTTAGCAAGGGAAATCACACTCTTTGCTCCCATTGCAAAGGAAGGGAAGCCGAGCTGTACTGCAAAACAGTGACACATGGTAGCGATCTCTTCATTACCCAATATTCAATTTCAGATGGTTATGTTGTAATGGATGGTCCAAGCTATTTTGTTTCTATTGAACTTAATGTGATGTCGTAA 3279 0.4203 MSSGGRKRPAPPTSHPSPATQAKTQALSQEDDFVDEDVFLNETLITEDEESLILRDIEERQALANRLSKWTRPPLSSDYVSQSCSVLFQQLEIDYVIGESHKVLMPNSSGPAAIIRIFGVTKEVLLELAFTFHTAKAFEGLEVVLKRAVVVEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMREANRNSNVGKFVRRIELVQRRSIMYYQQSSSHPFLKIVVALPTMVASCRGILDRGIQLNGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTARSLSNCQLEFDCLHSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLNSCSPIVGVDVMSFDTEREVLLAWRDFIHEVDPDIIIGYNICKFDLPYLIERAQALKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLARGQSIKVLSQLLRKAKQKNLVLPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPESVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHTAEVIYGDTDSVMVQFGVSTVEEAMNLGREAAEYISGTFTKPIKLEFEKVYFPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSKGNHTLCSHCKGREAELYCKTVTHGSDLFITQYSISDGYVVMDGPSYFVSIELNVMS* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2155 1092 SUPERFAMILY Ribonuclease H-like 149 563 IPR012337 -
Amo08g2155 1092 ProSitePatterns DNA polymerase family B signature. 771 779 IPR017964 GO:0000166|GO:0003676
Amo08g2155 1092 Gene3D DNA Polymerase, chain B, domain 1 135 296 - -
Amo08g2155 1092 Pfam DNA polymerase family B, exonuclease domain 152 493 IPR006133 -
Amo08g2155 1092 CDD DNA_polB_delta_exo 320 549 - -
Amo08g2155 1092 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 85 1059 - -
Amo08g2155 1092 CDD POLBc_delta 598 991 - -
Amo08g2155 1092 Gene3D - 845 1000 IPR042087 -
Amo08g2155 1092 SUPERFAMILY DNA/RNA polymerases 582 992 IPR043502 -
Amo08g2155 1092 TIGRFAM pol2: DNA polymerase (pol2) 376 988 - -
Amo08g2155 1092 PRINTS DNA-directed DNA-polymerase family B signature 769 777 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo08g2155 1092 PRINTS DNA-directed DNA-polymerase family B signature 708 720 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo08g2155 1092 PRINTS DNA-directed DNA-polymerase family B signature 616 629 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo08g2155 1092 Pfam DNA polymerase family B 557 990 IPR006134 GO:0000166|GO:0003677
Amo08g2155 1092 Gene3D Helix hairpin bin 672 724 - -
Amo08g2155 1092 Gene3D Palm domain of DNA polymerase 598 828 IPR023211 -
Amo08g2155 1092 SMART polmehr3 324 783 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo08g2155 1092 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 85 1059 - -
Amo08g2155 1092 Gene3D - 325 543 IPR036397 GO:0003676
Amo08g2155 1092 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2155 Amo-Chr8 34471820 34485088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2155 7 1063 Core DNA Replication Machinery Family AT5G63960 79.294 0.0 1752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2155 K02327 - gmx:100817379 1878.99